Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc276821g00001 GTGAATGCTGCAAACTTCATGGCGAAGAACATTGGATTCGAGAACACAGCAGGCCCAGAAAAGCACCAAGCAGTGGCACTCAGAATCACAGCAGACCAAGCCGTGATCTACAACTGCCACATGGAAGCCGGTGGAAGAACCAAAGTTGACAGCCCAACTGCCCTTGTTTTCCAGAGCTGCTACTTCACTGGGGATCCTCAACTTGCAAGCTTGAACCCCAAGATTGCTTACTTGGGTCGCCCATGGAGGACTTACTCCAAGGTGGTTATCATGGACTCCATCATTGATGATATCATTGTGCCTGAAGGGTACATGCCATGGATGGGAAGTGCATACAAGGACACGTGTACTTATTATGAGTATAACAATAAGGGACCCGGTGCTGATACCTCAAAGAAGGTTAAGTGGCCTGGGTTTAAGGTCTTGGATGCTCCTGAAGCTGCTAATTATTATCTAGGCAAATTCTATGAGCTTTCTAACTCTACCTATAACTATTAA 498 0.4639 VNAANFMAKNIGFENTAGPEKHQAVALRITADQAVIYNCHMEAGGRTKVDSPTALVFQSCYFTGDPQLASLNPKIAYLGRPWRTYSKVVIMDSIIDDIIVPEGYMPWMGSAYKDTCTYYEYNNKGPGADTSKKVKWPGFKVLDAPEAANYYLGKFYELSNSTYNY 165
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc276821g00001 165 Gene3D - 1 43 IPR012334 -
Stsc276821g00001 165 SUPERFAMILY Pectin lyase-like 1 156 IPR011050 -
Stsc276821g00001 165 PANTHER PECTINESTERASE 1 43 - -
Stsc276821g00001 165 Pfam Pectinesterase 43 155 IPR000070 GO:0030599|GO:0042545
Stsc276821g00001 165 Gene3D - 44 164 IPR012334 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc276821g00001 Stsc-Chr276821 647 1308 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc276821g00001 1 157 Carbohydrate Esterase AT5G49180 36.449 7.10e-40 139
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc276821g00001 K01051 - gmx:100820068 226.098