Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc276640g00001 TATGAGCTTGATGTGTCAAGAAATAACATAACAGGAACACTAGACCCTCGTTTATTTCCTGATGGAACCAATGAGCCAAGAACCGGTCTCATTAGTATAAGAAATTTCCTGTCTCAAAGAACACTCTTAGGTGGGAAAATTCCTAATGAAATAGGCAACATAAGAAACTTGACTTTGCTAGCCTTAGACGAGAACAACTTTTATGGACCTATACCTCCATCTATAGGAAACTGCACACATTTAAGTGTTCTTAGACTGAATGAAAACCATCTCTCAGGTACAATCCCTTCTAGTATTGGCAAGTTAACTAACTTAACCGATGTGCGGTTTCACATTAACAATTTAACCGGCACGGTGCCGCGAGAATTGGGAAACTTGTCTTCCTTAGTTGTACTTCATCTGGCTGAGAACAACTTTGTTGGAGAATTGCCACCTGAGGTGTGCAAAGGTGGAAAGCTTGTCAACTTCAGTGCAGCATACAACAGTTTCACTGGTTTGATCCCAAGAAGCCTTAGAAACTGCTCAACGTTGTACCGAGTTCGAATGGAGTACAACCAGTTGAAAGGCTATGCTGATCAAGATTTTGGTGTGTATCCAAATCTTACATATCTTGATTTCAGCTACAACAAGGTTCAAGGCCAGCTGTCTGCGAAATGGGGTGCCTGCAACAACTTGCAACTGCTTAAAATGGCTGGTAATTCCATAAGCAGCATTATTCAAGAAGAGATTTTTCAGCTGAAGCAACTTGAAGTACTTGACTTGTCCAATAATCAAATATCAGGGAAGATTCCTTTGCAGATAGAGAATGCGAATCGCTTGTTTCAATTGAATTTGGGTGGCAACAAGCTTACTGGTATGATACCAGAAGAAATTGGAAAGCTTTCTAATTTGGAGGATTTAGACTTGTCCATGAACAAGCTATTTGGACCAATCCCAAATCAGATAGAGGATTGCTCCAAGTTGCAGAGTTTAAATTTGAGCAACAATCACCTGAATGGCACAATCCCTTACCAGATTGGAAATCTTGCAGCCTTGCAAGAATTTTTGGACCTGAGCTACAATTCATTTTCAGGGGAGATTCCTGCTGATCTTAGTAAGCTAGAGAATTTGGTAAGCTTGAATCTCTCTCACAACAATCTCTCCGGCGGCATCCCCGAGTTCCTTGGAGGAATGTTGAGCTTGTCAACCATCAACCTCTCTTACAATCATCTGGAAGGCCCTGTTCCGAAATCTGGCATATTCAACTCTTCTGTTCTTCCAAGTGATTTGAGAAACAACAAAGATTTATGTGGCAATATCCAAGGTTTGCGGCCTTGTGAAGTCTCAGTCATTGAACCTGTTGATGGAAGTAGTAAAAGAAAAAATCTTGCAGTTCTTTTGGGTAGTATCTTGGGAGGTTCTTTATTCCTTTCATTGGTGTTAGTTGGGATTCTGTGCTTCCGGAAGAAGCAAGAATCCGCATTTTCAAGACATAGCTCTTCAACAACCAAGAGAAACAATCTGTTTTCAATTTGGTCGTTCGACGGCCAGATTGTCTACAAAGATATAATTGAAGCTACCAACAATTTTGACAGCCAATGCTGCGTCGGCGAGGGAGCGCTCGGAAAAGTTTACAAGGCGGTTATCAAAGGAGGAGGCCAAGTGTTTGCTGTGAAAAAGATGAAATGTGAGTCAGACAGTTTAGACTTTCAGAGTATAAAATCCTTCCAGAGTGAAGTGGAAGCCATGGGAGAAACTCGCCACCGGAACATTGTGAAGCTCTATGGATTCTGCTATAGAGGGACACACACGTTCTTGATTTATGAGTATATGGAGAGAGGGAACTTAGCTGATATGCTTGGAAATGACAAGAATGCATTGGAATTGGATTGGCCTAAGAGAGTTGAGATTGTCAAAGGCGTGGCACATGCTTTGTCTTATATGCATCATGATCACAATCCACCATTGATTCACAGAGACATATCAAGCAAGAATGTTTTGCTGTCCTTCAATCTTGAAGCTCGTGTCTCTGATTTCGGCACTGCTAGGTTCTTGAAGCCAGATTCATCGATTTGGACGTCGTTTGCAGGCACATATGGCTATGCTGCTCCAGGTGCGTAA 2100 0.4171 YELDVSRNNITGTLDPRLFPDGTNEPRTGLISIRNFLSQRTLLGGKIPNEIGNIRNLTLLALDENNFYGPIPPSIGNCTHLSVLRLNENHLSGTIPSSIGKLTNLTDVRFHINNLTGTVPRELGNLSSLVVLHLAENNFVGELPPEVCKGGKLVNFSAAYNSFTGLIPRSLRNCSTLYRVRMEYNQLKGYADQDFGVYPNLTYLDFSYNKVQGQLSAKWGACNNLQLLKMAGNSISSIIQEEIFQLKQLEVLDLSNNQISGKIPLQIENANRLFQLNLGGNKLTGMIPEEIGKLSNLEDLDLSMNKLFGPIPNQIEDCSKLQSLNLSNNHLNGTIPYQIGNLAALQEFLDLSYNSFSGEIPADLSKLENLVSLNLSHNNLSGGIPEFLGGMLSLSTINLSYNHLEGPVPKSGIFNSSVLPSDLRNNKDLCGNIQGLRPCEVSVIEPVDGSSKRKNLAVLLGSILGGSLFLSLVLVGILCFRKKQESAFSRHSSSTTKRNNLFSIWSFDGQIVYKDIIEATNNFDSQCCVGEGALGKVYKAVIKGGGQVFAVKKMKCESDSLDFQSIKSFQSEVEAMGETRHRNIVKLYGFCYRGTHTFLIYEYMERGNLADMLGNDKNALELDWPKRVEIVKGVAHALSYMHHDHNPPLIHRDISSKNVLLSFNLEARVSDFGTARFLKPDSSIWTSFAGTYGYAAPGA 699
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc276640g00001 699 SMART LRR_typ_2 126 150 IPR003591 -
Stsc276640g00001 699 SMART LRR_typ_2 319 342 IPR003591 -
Stsc276640g00001 699 SMART LRR_typ_2 246 270 IPR003591 -
Stsc276640g00001 699 SMART LRR_typ_2 294 318 IPR003591 -
Stsc276640g00001 699 SMART LRR_typ_2 367 391 IPR003591 -
Stsc276640g00001 699 SMART LRR_typ_2 78 102 IPR003591 -
Stsc276640g00001 699 PANTHER LEUCINE RICH REPEAT KINASE 2 39 697 - -
Stsc276640g00001 699 Pfam Leucine rich repeat 320 380 IPR001611 GO:0005515
Stsc276640g00001 699 Pfam Leucine Rich Repeat 248 268 IPR001611 GO:0005515
Stsc276640g00001 699 Gene3D Ribonuclease Inhibitor 155 443 IPR032675 -
Stsc276640g00001 699 ProSiteProfiles Protein kinase domain profile. 523 699 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc276640g00001 699 FunFam Probable leucine-rich repeat receptor-like protein kinase At5g63930 45 145 - -
Stsc276640g00001 699 FunFam Leucine-rich repeat receptor protein kinase MSP1 485 603 - -
Stsc276640g00001 699 Gene3D Transferase(Phosphotransferase) domain 1 604 699 - -
Stsc276640g00001 699 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 147 442 - -
Stsc276640g00001 699 Gene3D Phosphorylase Kinase; domain 1 482 603 - -
Stsc276640g00001 699 ProSitePatterns Tyrosine protein kinases specific active-site signature. 649 661 IPR008266 GO:0004672|GO:0006468
Stsc276640g00001 699 ProSiteProfiles Leucine-rich repeat profile. 248 269 IPR001611 GO:0005515
Stsc276640g00001 699 SUPERFAMILY Outer arm dynein light chain 1 32 144 - -
Stsc276640g00001 699 PRINTS Leucine-rich repeat signature 249 262 - -
Stsc276640g00001 699 PRINTS Leucine-rich repeat signature 294 307 - -
Stsc276640g00001 699 SUPERFAMILY RNI-like 113 412 - -
Stsc276640g00001 699 SUPERFAMILY Protein kinase-like (PK-like) 499 697 IPR011009 -
Stsc276640g00001 699 Pfam Protein kinase domain 529 697 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc276640g00001 699 Gene3D Ribonuclease Inhibitor 1 154 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc276640g00001 Stsc-Chr276640 50 2152 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc276640g00001 2 699 Receptor kinase-like Gene Family AT4G08850 43.407 0.0 563
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Stsc276640g00001 Pkinase 3.9e-35 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc276640g00001 - - ahf:112786571 1148.27