Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc275g00011 ATGGCGACGAACCGGTTCATCTGCGAGATATGCAACAAAGGGTTCCAGAGGGATCAGAACCTTCAGCTTCACAGGAGGGGGCATAACCTGCCATGGAAGCTGAGACAGAGGTCAAACAAGGAGGTGAAGAAGAAGGTGTACATCTGCCCGGAGAAGAGCTGTGTCCACCACGAGCCGNNNNNNNNNNAGCACTTCAGCAGAAAGCACGGCGAGAAGAAGTGGAAGTGCGAAAAGTGCTCCAAGAAGTACGCCGTCCAATCTGATTGGAAAGCTCACACCAAAACATGCGGCACTAGAGAATATAAATGTGACTGCGGCACCCTCTTTTCCAGGAAGGATAGCTTTATCACGCACAGAGCATTTTGCGATGCATTGGCTGAAGAGAGCGCGAGGCTGAACTCGGTAACTACTTCAACGAATCTGAGTTTCAAGAACGAAGAGGTAACAACAACGCAGCAGGGAGTTGGATTTCGATTTGATTTCAATAAAGAAATGGGAATTGGAGGCATGGGAATGGTTGGTGCGGCGGCAGCAGAACAAGAACAGATTATTAGGCCAAACTTGTCACTGTGGTTGAACCAGCAACAGGGAAACAACAACCCTCATCATCAATTTGAAATGCCATCATCATCATCAACCTCTCATCATCAAGCTATGATGCACATGGCTATGCCTATGTTGCCTAATGATCATTTTGGAATGGCTGCTCCTAATACCAATTCATCATGTATTGGGAAAAAGGTATCATCAGAAGAAGTAGTGGTAGCTGATCATAATTCAAATTTGGCATCTATGTATTCTGATAATAAATCGTCCAAGTCAGCTTCAGCTTATTCTCCTATGTCAGCAACTGCGCTTCTTCAGAAGGCAGCGCAAATGGGGTCCACCAGCAACAACCCTTCAACTTTCAGTGCCAGTTTTGGACTAATGACCTCTTCACCTTCCATTCAAACCAATAATAATAATGCAAACCAAACCCAACAGGGAAGAAGAATTGATCATCAGAGCATTAAGCAACCGGATCATCAGAGTTTTAGTGCATTAATGCAGCATCCATCACAAAGTTTTGATGATCAGTTTTTGAGTAATAATAATCATCATCCTGGTAATAACAATTTCACAAGAGACTTTCTTGGCATGAGTAGAGGACCGTTCCTACCACAAGAGCTAGCAAAGTTTGCTTCAGTAGGTTCATCATCAATGGGGTTGACCCAATTCACTACAAGCGCAACCCATCAATGA 1242 0.4404 MATNRFICEICNKGFQRDQNLQLHRRGHNLPWKLRQRSNKEVKKKVYICPEKSCVHHEPXXXXHFSRKHGEKKWKCEKCSKKYAVQSDWKAHTKTCGTREYKCDCGTLFSRKDSFITHRAFCDALAEESARLNSVTTSTNLSFKNEEVTTTQQGVGFRFDFNKEMGIGGMGMVGAAAAEQEQIIRPNLSLWLNQQQGNNNPHHQFEMPSSSSTSHHQAMMHMAMPMLPNDHFGMAAPNTNSSCIGKKVSSEEVVVADHNSNLASMYSDNKSSKSASAYSPMSATALLQKAAQMGSTSNNPSTFSASFGLMTSSPSIQTNNNNANQTQQGRRIDHQSIKQPDHQSFSALMQHPSQSFDDQFLSNNNHHPGNNNFTRDFLGMSRGPFLPQELAKFASVGSSSMGLTQFTTSATHQ 413
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc275g00011 413 ProSitePatterns Zinc finger C2H2 type domain signature. 8 28 IPR013087 -
Stsc275g00011 413 MobiDBLite consensus disorder prediction 355 375 - -
Stsc275g00011 413 ProSiteProfiles Zinc finger C2H2 type domain profile. 6 28 IPR013087 -
Stsc275g00011 413 SUPERFAMILY beta-beta-alpha zinc fingers 5 94 IPR036236 -
Stsc275g00011 413 Pfam Zinc-finger double-stranded RNA-binding 6 28 IPR022755 -
Stsc275g00011 413 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 1 394 IPR031140 -
Stsc275g00011 413 MobiDBLite consensus disorder prediction 193 216 - -
Stsc275g00011 413 Gene3D Classic Zinc Finger 2 29 - -
Stsc275g00011 413 Gene3D Classic Zinc Finger 39 122 - -
Stsc275g00011 413 SMART c2h2final6 74 94 IPR013087 -
Stsc275g00011 413 SMART c2h2final6 6 28 IPR013087 -
Stsc275g00011 413 MobiDBLite consensus disorder prediction 292 341 - -
Stsc275g00011 413 FunFam Zinc finger protein MAGPIE 2 29 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc275g00011 Stsc-Chr275 55193 57071 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc275g00011 1 397 IDZ Gene Family AT5G03150 44.977 1.59e-98 301
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Stsc275g00011 zf-C2H2_jaz 5.8e-05 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc275g00011 K25870 - gmx:100812495 380.948