Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc275g00010 ATGCTTAGTGCTATGAGTTTGTCGTTGCTGCCGATGGATTCGCTAGCGTGCAGGGGTTTTCTTTACGCGCTCTTTATACTCAACTTTGTTCTCGTTTGCCAACTCATTCTCCTTCAACCTCTTGTTTCTGCTTCAGGTGGAAAATCTGGAAATGCTGCTGAGTTATTTGAGAAGGCATCAGAGAGTATAAAAGTTAAACATTATACTGAGGCACTTAACGATCTAAATGCTGCGATAGAAGCAGATCCAAATCTTTCTGAAGCATATCTATTCCGTGCATCAGTTCTTCGTCAGTTGTGCAGATATGAACAATCAGAGGGGAGCTACAAGAAGTTTCTGGAGCTTAAACCTGGACACTCAGCTGCAGAAAAGGAGCTCTCCCAGCTTTTGCAGGCTAAGAGTGCCCTAGAAACAGCTCGGTCCCTTTTTGGTTCAGGCAACTTCACAAAATCTTTGGAATATATTGATAAAGTTGTTCTTGTTTTTTCTCCAGCTTGCACCGAGGCTAAGCTACTGAAAGTGAAGTTATTCATAGCTGATAAAGAGTATGAAAGTGCCATAGCTGAGTCCGGGTTCCTTCTCAAGGAAGATGAAAATAATTTAGAGGCATTGTTGTTGCGTGGTCGTGCATATTACTATTTAGCTGATCATGATGTTGCCACCAGGCATTACCAGAAAGGCCTCCGCCTTGATCCAGAGCACAGTGAACTAAAAAAAGCATATTTTGGATTGAAAAATCTACTAAAAAAGACCAAAAGTGCTGAAGATAATGCAAGTAAGGGTAAGCTCCGTGTGGCAGTGGAGGAATTCAAAAGTGCACTTAAAGTTGACCCCGATCATCTTGCACATAATGTAAATCTTCATCTAGAATTATGTAAAGTCCTGGTCAAGCTTGGGAGAGGAAAAGATGCCTTGGACAGTTGTAATGGAGCTCTTAAAATCAATGAGGAACTTCTTGAAGCCCTTGTTCAGAGGGGAGAAGCTAAACTTCTTATAGAAGATTGGGAGGGAGCTGTTGAGGATCTGAAATCAGCTGCTCAAAAATCTCCTCAGGACATGAATATTCGTGAGGCAGTAATGAGGGCTGAGAAAGCTTTAAAGCTGAGCAAACGCAAGGATTACTACAAGATTTTGGGAATTTCAAAAACGGCTTCAGCCCCCGAGATAAAACGTGCATACAAGAAACTTGCTTTGCAATGGCACCCTGATAAGAATGTAGAAAATAGGGAAGAAGCAGAGGCTCAGTTCCGGGAAATCGCTGCCGCATATGAGGTACTCAGCGATGAAGAGAAACGCACAAGATACGACAGAGGGGAGGACCTTGAAGACATGAGCGGTGGCGGGGGTGGTGGGTTCAACCCATTTGGTGCCGGTGGGTTTGGTGGACAGCAGTATCACTTCACCTTCGATGGTGGCTTTCCCGGGGGTGGCTTCGGAGGAGGCTTTCCCGGGGGAGGTGGGGGGTACGAGTTCCATTTTTGA 1482 0.4453 MLSAMSLSLLPMDSLACRGFLYALFILNFVLVCQLILLQPLVSASGGKSGNAAELFEKASESIKVKHYTEALNDLNAAIEADPNLSEAYLFRASVLRQLCRYEQSEGSYKKFLELKPGHSAAEKELSQLLQAKSALETARSLFGSGNFTKSLEYIDKVVLVFSPACTEAKLLKVKLFIADKEYESAIAESGFLLKEDENNLEALLLRGRAYYYLADHDVATRHYQKGLRLDPEHSELKKAYFGLKNLLKKTKSAEDNASKGKLRVAVEEFKSALKVDPDHLAHNVNLHLELCKVLVKLGRGKDALDSCNGALKINEELLEALVQRGEAKLLIEDWEGAVEDLKSAAQKSPQDMNIREAVMRAEKALKLSKRKDYYKILGISKTASAPEIKRAYKKLALQWHPDKNVENREEAEAQFREIAAAYEVLSDEEKRTRYDRGEDLEDMSGGGGGGFNPFGAGGFGGQQYHFTFDGGFPGGGFGGGFPGGGGGYEFHF 493
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc275g00010 493 ProSiteProfiles dnaJ domain profile. 373 439 IPR001623 -
Stsc275g00010 493 Pfam Tetratricopeptide repeat 64 119 - -
Stsc275g00010 493 Pfam Tetratricopeptide repeat 202 234 IPR013105 -
Stsc275g00010 493 ProSitePatterns Nt-dnaJ domain signature. 416 435 IPR018253 -
Stsc275g00010 493 SUPERFAMILY Chaperone J-domain 367 475 IPR036869 -
Stsc275g00010 493 SUPERFAMILY TPR-like 64 368 IPR011990 GO:0005515
Stsc275g00010 493 PRINTS DnaJ domain signature 375 393 IPR001623 -
Stsc275g00010 493 PRINTS DnaJ domain signature 411 431 IPR001623 -
Stsc275g00010 493 PRINTS DnaJ domain signature 393 408 IPR001623 -
Stsc275g00010 493 PRINTS DnaJ domain signature 431 450 IPR001623 -
Stsc275g00010 493 Pfam DnaJ domain 373 436 IPR001623 -
Stsc275g00010 493 CDD DnaJ 373 428 IPR001623 -
Stsc275g00010 493 Gene3D DnaJ domain 371 481 IPR036869 -
Stsc275g00010 493 Gene3D Tetratricopeptide repeat domain 46 370 IPR011990 GO:0005515
Stsc275g00010 493 Coils Coil 119 139 - -
Stsc275g00010 493 ProSiteProfiles TPR repeat profile. 201 234 IPR019734 GO:0005515
Stsc275g00010 493 SMART tpr_5 52 85 IPR019734 GO:0005515
Stsc275g00010 493 SMART tpr_5 86 119 IPR019734 GO:0005515
Stsc275g00010 493 SMART tpr_5 285 318 IPR019734 GO:0005515
Stsc275g00010 493 SMART tpr_5 319 352 IPR019734 GO:0005515
Stsc275g00010 493 SMART tpr_5 201 234 IPR019734 GO:0005515
Stsc275g00010 493 FunFam DnaJ domain containing protein 39 370 - -
Stsc275g00010 493 Coils Coil 409 429 - -
Stsc275g00010 493 PANTHER DNAJ PROTEIN P58IPK HOMOLOG 23 493 IPR044620 -
Stsc275g00010 493 SMART dnaj_3 372 431 IPR001623 -
Stsc275g00010 493 FunFam DnaJ subfamily C member 7 371 481 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc275g00010 Stsc-Chr275 40039 44737 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc275g00010 369 436 C2H2 Transcription Factor Family AT1G74250 48.611 3.69e-12 66.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc275g00010 K09523 - gmx:100781496 748.814