Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc275g00007 ATGGCAACTCAGCAACAAGAAGAAGGCTTTCCAAATTACAGTGATCAAGTTGATGGTATCACTACCACTGCTACAGTAGCTCACACCCCAATTCACAAGGGTGTAGAATCAACTGAAATAACTGGAGAACTACCTAGTACTAGTAGACAACATGGAAGAAGGCAAAATCTTATGTTGGAGATACCTGCAAGAAATCTTGATGAAGCAAGAGAGGAATTCTTGAGAATTAACATGCCCTCTCCAAGCCCTGCTTTCTCCAGCATCAACAATGAGTTACAACCAAAAAGTAAATCAGCTATTAAAACCCTTATTCCCAAACTTAGCTTTAAATTTGGGAACAGTGAAAAGACTTCCATTCTAGCACTTGAAGGTTCTTCCACAGAGGTGCCGAAAAAGCCTATGATTTCGAGGACATTATCTCTTACAAAGTTGATCACACCTAGAGGGAAGAAAATGTCATCTTTACCCGTGACACCAATTGGAGGAAACACAACCAATATGACAACATATGTGAGAAAAGGACAGAGATCATCGATTCCTCGATCACGTTCAGTTCCTGTGCTTAACAAAGATGGGAACCCATCTGCAGGTGTGATGCTGCGTGTAGTTCCTACCACACCACGGTTAGCTGGTAGCGCTGCCACAACATCAATGAAGTCTTCATCTGACATTACTGTTGAGGATGAGGATGGAGAGGACATTCCAGAAGAAGAAGCTGTGTGTAGAATATGTTTGATTGAACTTGGAGAAGGTGCTGATACCCTTAAAATGGAGTGCAGCTGCAAAGGTGAGCTAGCGCTGGCGCACCAAGAATGCGCTGTTAAATGGTTCAGCATCAAAGGTAACAGAACATGTGATGTGTGCAAGCAACAAGTTCAGAATCTACCTGTCACTCTTTTACGAATTGCGAGCACTCGTGCACCGAACTTCTTGATAAGTAGCCAAGGTCAGCAATACAGGGTTTGGGAAACTGTTCCAATTCTTGTGGTTATCAACATGATGGCTTACTTCTGTTTTGTTGAACAGCTTCTTGTTTCAAATATGGGGTCTGGTGCCATTGGAATATCTCTCCCATTTTCTTGTATACTTGGCCTTCTTGCAAGCATGACATCAACAACAATGGCGAGGAGAAAACATGTATGGCTTTATGCGATTGCCCAATTTGTTATGGTGTTTCTTGCTGGACGTCTTTTCTATTCACTGCTTCATGTGCAAGCAGTGCTATCTATGCTACTTGCCACGTTTACTGGGTTTGGAGCTGTAATGTGTGCAGCCTCTGTTCTGTTTGAGTTTCTGAAGTGGAGGAGGAGATGGTTTACTCAGTTGAATCAAAATCACCATGGTTCCCAAGATGTGCTTGTGCCACCAACTCATCAATTATCTGCAACAACCACATAA 1398 0.4263 MATQQQEEGFPNYSDQVDGITTTATVAHTPIHKGVESTEITGELPSTSRQHGRRQNLMLEIPARNLDEAREEFLRINMPSPSPAFSSINNELQPKSKSAIKTLIPKLSFKFGNSEKTSILALEGSSTEVPKKPMISRTLSLTKLITPRGKKMSSLPVTPIGGNTTNMTTYVRKGQRSSIPRSRSVPVLNKDGNPSAGVMLRVVPTTPRLAGSAATTSMKSSSDITVEDEDGEDIPEEEAVCRICLIELGEGADTLKMECSCKGELALAHQECAVKWFSIKGNRTCDVCKQQVQNLPVTLLRIASTRAPNFLISSQGQQYRVWETVPILVVINMMAYFCFVEQLLVSNMGSGAIGISLPFSCILGLLASMTSTTMARRKHVWLYAIAQFVMVFLAGRLFYSLLHVQAVLSMLLATFTGFGAVMCAASVLFEFLKWRRRWFTQLNQNHHGSQDVLVPPTHQLSATTT 465
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc275g00007 465 CDD RING_CH-C4HC3_MARCH 241 289 - -
Stsc275g00007 465 ProSiteProfiles Zinc finger RING-CH-type profile. 233 295 IPR011016 GO:0008270
Stsc275g00007 465 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 226 297 IPR013083 -
Stsc275g00007 465 MobiDBLite consensus disorder prediction 209 231 - -
Stsc275g00007 465 SUPERFAMILY RING/U-box 237 292 - -
Stsc275g00007 465 PANTHER OS02G0165000 PROTEIN 19 452 - -
Stsc275g00007 465 SMART ringv_2 240 289 IPR011016 GO:0008270
Stsc275g00007 465 Pfam RING-variant domain 241 288 IPR011016 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc275g00007 Stsc-Chr275 28577 31367 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc275g00007 226 305 C3H Transcription Factor Family AT2G37950 37.037 2.47e-13 67.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc275g00007 - - gmx:100789854 535.028