Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc275g00005 ATGGGCAACGCATCGAGCAGCGGCGGCACCGCCCGTCGCGGACATGTTGTTGTTTCTAGAAGGACTCATCCACCGCCTCCTCCTCCGGTGGCGCCGCAGCCGGAGATCACCTCCAATCCCTTCCTGTATCCTCCCGGAGGCAACCCGTACCCGCCTCAGTACCCGAACCAGAACCGTCCTCCGATGCAATACCCGTATCCTTACCCCGCTTACTACCCTCCGCCGCCGACGGTGCCCTTCCCCCACCACAACCAGCAACAGGCTCAGCCTCAAATGGGGGCCGGGTGGGTTGGGGGCCGGGGTTACCCTTGCGGGCCAATGGTGGCTCCTCCAGCACCTATCGTGGAGCACCAGAAGGCCGTGACAATCAGGAACGACGTCAATGTCAAGAAGGAAACCCTGAAGATCGAGCCCGATGACGAGAACCCTGGCCAATTCCTCGTCTCCTTCACGTTTGACGCCACGGTTTCTGGTTGCATCACAATTTATTTCTTTGCAAAAGAAAATGAAAGCTGCATTCTAACACCAATGAAAGAAAACCTGGCACCTGCGACTGTTAATTTTCAGCAAGGTCTTGGCCAGAAGTTTAGACAGCCTGCTGGAAGTGGTATTGATTTTAAAATGTTTAATGAGACGGAGTTGTTGCAAGTGGGTGAGATGGATGTGTATCCTCTAGCAGTAAAAGCAGATGCGTCCTCTAATAATCACAATGGATCAGATGAAACTACAACATCTAATACCAGAAACTCACAGATAACACAAGCAGTGTTTGAGAAGGAGAAAGGTGAGTTCCGGGCGAAAGTTGTCAAGCAGATTTTGTGGGCAAATGGAATGAGGTATGAGTTGCAGGAGATATACGGCATTGGAAGTTCAGCAGAGACTGGTGCGGATGAGAGTGACCAAGGGAAAGAGTGCGTCATCTGTTTGACAGAGCCTCGGGACACTATTGTCCATCCCTGCCGACATATGTGCATGTGTAGTGAATGCGCAAAGGTTTTGAGGTTCCAGACAAATAGATGCCCAATTTGCAGACAACCAGTTGAGAGGCTTCTGGAGATAAAGGTAGGGCCTGAGGAGTGA 1080 0.5176 MGNASSSGGTARRGHVVVSRRTHPPPPPPVAPQPEITSNPFLYPPGGNPYPPQYPNQNRPPMQYPYPYPAYYPPPPTVPFPHHNQQQAQPQMGAGWVGGRGYPCGPMVAPPAPIVEHQKAVTIRNDVNVKKETLKIEPDDENPGQFLVSFTFDATVSGCITIYFFAKENESCILTPMKENLAPATVNFQQGLGQKFRQPAGSGIDFKMFNETELLQVGEMDVYPLAVKADASSNNHNGSDETTTSNTRNSQITQAVFEKEKGEFRAKVVKQILWANGMRYELQEIYGIGSSAETGADESDQGKECVICLTEPRDTIVHPCRHMCMCSECAKVLRFQTNRCPICRQPVERLLEIKVGPEE 359
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc275g00005 359 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 289 354 IPR013083 -
Stsc275g00005 359 ProSiteProfiles Zinc finger RING-type profile. 305 344 IPR001841 -
Stsc275g00005 359 PANTHER MAHOGUNIN 1 354 IPR045194 GO:0061630
Stsc275g00005 359 SUPERFAMILY RING/U-box 304 349 - -
Stsc275g00005 359 MobiDBLite consensus disorder prediction 21 62 - -
Stsc275g00005 359 CDD mRING-HC-C3HC5_MGRN1-like 303 344 IPR045195 -
Stsc275g00005 359 FunFam probable E3 ubiquitin-protein ligase LOG2 289 354 - -
Stsc275g00005 359 Pfam Zinc finger, C3HC4 type (RING finger) 303 349 - -
Stsc275g00005 359 MobiDBLite consensus disorder prediction 1 62 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc275g00005 Stsc-Chr275 16726 19489 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc275g00005 102 324 C3H Transcription Factor Family AT3G09770 61.472 8.39e-92 276
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc275g00005 - - aprc:113862864 477.248