Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc275g00004 ATGAGATTCAATTGGGAAGCAAGGAAGGATGTGTCCATAGGTGTGGCCTCTGTTCTTGCTTTTCTTCATGAGGAACTTAAGCCTCATATTCTACATAGAGATATCAAATCAAGCAACATCCTTCTTGATCGAGATTTCACACCTAAGGTCTCGGATTTCGGCCTCGCCAAGCTACTCAGAGACGAAAAGTCCTATGTCAGCACTCGAGTTGCCGGCACATTGGGCTATCTTGCTCCGGAGTATGCTAGTTCCGGACAAGTTTCGCGAAAATCAGATGTCTACAGCTTCGGAGTGCTGCTCTTAGAAATTGTTAGTGGAGGATCGGTGGTTGGTGCTTATCAAGACATGGAACGTTTCATGGTAGAGAAGGCTTGGGCAGCATATGGAGAGAATGATGTGTTAAAAATGGTTGATCCAGTGCTAGATATGAAGTATCCTGTGGAGGAGGCAAAACGGTTCTTGATGGTGGGTTTGCTTTGTGTTCAAGAAACTGCAAAGCTTAGGCCACGGATGGCAGAGGTTGTAGAGATGTTGAAGAACAAGAGGGACATGGAAGGGGTTCAGATTTCAAAACCGGGTTTTGTTGAGGATCTAAGGAGCATTAGAATCAGGCAGCAAGAAGTAATGCATTCATCTGAAGAAGCTGCAACAAGTTCTTTATTGAATACGTCTACTCTTGCCCGTTAG 687 0.4483 MRFNWEARKDVSIGVASVLAFLHEELKPHILHRDIKSSNILLDRDFTPKVSDFGLAKLLRDEKSYVSTRVAGTLGYLAPEYASSGQVSRKSDVYSFGVLLLEIVSGGSVVGAYQDMERFMVEKAWAAYGENDVLKMVDPVLDMKYPVEEAKRFLMVGLLCVQETAKLRPRMAEVVEMLKNKRDMEGVQISKPGFVEDLRSIRIRQQEVMHSSEEAATSSLLNTSTLAR 228
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc275g00004 228 PANTHER CYSTEINE-RICH RECEPTOR-LIKE PROTEIN KINASE 3 3 219 - -
Stsc275g00004 228 SMART serkin_6 5 178 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc275g00004 228 Pfam Protein tyrosine and serine/threonine kinase 6 178 IPR001245 GO:0004672|GO:0006468
Stsc275g00004 228 ProSiteProfiles Protein kinase domain profile. 1 194 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc275g00004 228 FunFam probable LRR receptor-like serine/threonine-protein kinase RKF3 1 186 - -
Stsc275g00004 228 Gene3D Transferase(Phosphotransferase) domain 1 1 195 - -
Stsc275g00004 228 SUPERFAMILY Protein kinase-like (PK-like) 2 196 IPR011009 -
Stsc275g00004 228 ProSitePatterns Serine/Threonine protein kinases active-site signature. 30 42 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc275g00004 Stsc-Chr275 11903 13832 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc275g00004 1 197 Receptor kinase-like Gene Family AT1G56120 45.455 5.18e-53 181
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Stsc275g00004 PK_Tyr_Ser-Thr 5.6e-26 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc275g00004 - - gmx:100813945 333.569