Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc275g00003 ATGAGAGGGGAGAGGGAGTTTGTGGCTGAATTGGCTACTCTTGCAAATATCAAGCATCAAAATTTGGTCATTCTTAGAGGCTGTTGTGTAGAAGGAGCAAAAAGATATCTAGTCTATGATCACATGGAGAATAACAACCTTTACCACACTTTCTTAGGTTCGGAGAAAAGTAGGATGAGATTCAATTGGGAAGCAAGGAAGGATGTGTCCATAGGTGTGGCCTCTGTTCTTGCTTTTCTTCATGAGGAACTTAAGCCTCATATTCTACATAGAGATATCAAATCAAGCAACATCCTTCTTGATCGAGATTTCACACCTAAGGTCTCGGATTTCGGCCTCGCCAAGCTACTCAGAGACGAAAAGTCCTATGTCAGCACTCGAGTTGCCGGCACATTGGGCTATCTTGCTCCGGAGTATGCTAGTTCCGGACAAGTTTCGCGAAAATCAGATGTCTACAGCTTCGGAGTGCTGCTCTTAGAAATTGTTAGTGGAGGATCGGTGGTTGGTGCTTATCAAGACATGGAACGTTTCATGGTAGAGAAGGCTTGGGCAGCATATGGAGAGAATGATGTGTTAAAAATGGTTGATCCAGTGCTAGATATGAAGTATCCTGTGGAGGAGGCAAAACGGTTCTTGATGGTGGGTTTGCTTTGTGTTCAAGAAACTGCAAAGCTTAGGCCACGGATGGCAGAGGTTGTAGAGATGTTGAAGAACAAGAGGGACATGGAAGGGGTTCAGATTTCAAAACCGGGTTTTGTTGAGGATCTAAGGAGCATTAGAATCAGGCAGCAAGAAGTAATGCATTCATCTGAAGAAGCTGCAACAAGTTCTTTATTGAATACGTCTACTCTTGCCCGTTAG 861 0.439 MRGEREFVAELATLANIKHQNLVILRGCCVEGAKRYLVYDHMENNNLYHTFLGSEKSRMRFNWEARKDVSIGVASVLAFLHEELKPHILHRDIKSSNILLDRDFTPKVSDFGLAKLLRDEKSYVSTRVAGTLGYLAPEYASSGQVSRKSDVYSFGVLLLEIVSGGSVVGAYQDMERFMVEKAWAAYGENDVLKMVDPVLDMKYPVEEAKRFLMVGLLCVQETAKLRPRMAEVVEMLKNKRDMEGVQISKPGFVEDLRSIRIRQQEVMHSSEEAATSSLLNTSTLAR 286
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc275g00003 286 PANTHER CYSTEINE-RICH RECEPTOR-LIKE PROTEIN KINASE 3 2 277 - -
Stsc275g00003 286 ProSitePatterns Serine/Threonine protein kinases active-site signature. 88 100 IPR008271 GO:0004672|GO:0006468
Stsc275g00003 286 SMART serkin_6 1 236 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc275g00003 286 Gene3D Transferase(Phosphotransferase) domain 1 43 249 - -
Stsc275g00003 286 Pfam Protein tyrosine and serine/threonine kinase 4 236 IPR001245 GO:0004672|GO:0006468
Stsc275g00003 286 Gene3D Phosphorylase Kinase; domain 1 1 42 - -
Stsc275g00003 286 FunFam LRR receptor-like serine/threonine-protein kinase IOS1 42 248 - -
Stsc275g00003 286 PIRSF ILK 2 245 - -
Stsc275g00003 286 ProSiteProfiles Protein kinase domain profile. 1 252 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc275g00003 286 SUPERFAMILY Protein kinase-like (PK-like) 5 253 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc275g00003 Stsc-Chr275 11903 13832 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc275g00003 2 277 Receptor kinase-like Gene Family AT1G53430 42.086 5.35e-73 239
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Stsc275g00003 PK_Tyr_Ser-Thr 2.2e-37 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc275g00003 - - gmx:100813945 434.876