Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc275g00002 ATGAACTGTTTCTCTACTTGTTTCTCTGTCAAACAAGAAACCAAACAAGAAGAAGTAAACAACTGGAATAAGGTAGATGATGATGGTGATGGAAGCTTTCGGGTGTTCAGTTACAGGGAATTGGCATCAGCCACCGGTGGTTTTCATCCCTCTCACAAAATTGGTGAAGGAGGTTTTGGCTCTGTCTACAAGGGGGTGCTCCGGGATGGGACATTGGTGGCAGTGAAAGTGCTTTCCATAGAGGTGGAGTCCATGAGAGGGGAGAGGGAGTTTGTGGCTGAATTGGCTACTCTTGCAAATATCAAGCATCAAAATTTGGTCATTCTTAGAGGCTGTTGTGTAGAAGGAGCAAAAAGATATCTAGTCTATGATCACATGGAGAATAACAACCTTTACCACACTTTCTTAGGTTCGGAGAAAAGTAGGATGAGATTCAATTGGGAAGCAAGGAAGGATGTGTCCATAGGTGTGGCCTCTGTTCTTGCTTTTCTTCATGAGGAACTTAAGCCTCATATTCTACATAGAGATATCAAATCAAGCAACATCCTTCTTGATCGAGATTTCACACCTAAGGTCTCGGATTTCGGCCTCGCCAAGCTACTCAGAGACGAAAAGTCCTATGTCAGCACTCGAGTTGCCGGCACATTGGGCTATCTTGCTCCGGAGTATGCTAGTTCCGGACAAGTTTCGCGAAAATCAGATGTCTACAGCTTCGGAGTGCTGCTCTTAGAAATTGTTAGTGGAGGATCGGTGGTTGGTGCTTATCAAGACATGGAACGTTTCATGGTAGAGAAGGCTTGGGCAGCATATGGAGAGAATGATGTGTTAAAAATGGTTGATCCAGTGCTAGATATGAAGTATCCTGTGGAGGAGGCAAAACGGTTCTTGATGGTGGGTTTGCTTTGTGTTCAAGAAACTGCAAAGCTTAGGCCACGGATGGCAGAGGTTGTAGAGATGTTGAAGAACAAGAGGGACATGGAAGGGGTTCAGATTTCAAAACCGGGTTTTGTTGAGGATCTAAGGAGCATTAGAATCAGGCAGCAAGAAGTAATGCATTCATCTGAAGAAGCTGCAACAAGTTCTTTATTGAATACGTCTACTCTTGCCCGTTAG 1113 0.4438 MNCFSTCFSVKQETKQEEVNNWNKVDDDGDGSFRVFSYRELASATGGFHPSHKIGEGGFGSVYKGVLRDGTLVAVKVLSIEVESMRGEREFVAELATLANIKHQNLVILRGCCVEGAKRYLVYDHMENNNLYHTFLGSEKSRMRFNWEARKDVSIGVASVLAFLHEELKPHILHRDIKSSNILLDRDFTPKVSDFGLAKLLRDEKSYVSTRVAGTLGYLAPEYASSGQVSRKSDVYSFGVLLLEIVSGGSVVGAYQDMERFMVEKAWAAYGENDVLKMVDPVLDMKYPVEEAKRFLMVGLLCVQETAKLRPRMAEVVEMLKNKRDMEGVQISKPGFVEDLRSIRIRQQEVMHSSEEAATSSLLNTSTLAR 370
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc275g00002 370 Gene3D Phosphorylase Kinase; domain 1 6 125 - -
Stsc275g00002 370 SMART serkin_6 48 320 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc275g00002 370 CDD STKc_IRAK 54 322 - -
Stsc275g00002 370 FunFam LRR receptor-like serine/threonine-protein kinase IOS1 126 332 - -
Stsc275g00002 370 ProSitePatterns Protein kinases ATP-binding region signature. 54 76 IPR017441 GO:0005524
Stsc275g00002 370 ProSitePatterns Serine/Threonine protein kinases active-site signature. 172 184 IPR008271 GO:0004672|GO:0006468
Stsc275g00002 370 ProSiteProfiles Protein kinase domain profile. 48 336 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc275g00002 370 Gene3D Transferase(Phosphotransferase) domain 1 126 333 - -
Stsc275g00002 370 Pfam Protein tyrosine and serine/threonine kinase 51 320 IPR001245 GO:0004672|GO:0006468
Stsc275g00002 370 SUPERFAMILY Protein kinase-like (PK-like) 30 337 IPR011009 -
Stsc275g00002 370 PANTHER CYSTEINE-RICH RECEPTOR-LIKE PROTEIN KINASE 3 32 361 - -
Stsc275g00002 370 FunFam Serine/threonine-protein kinase receptor 17 125 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc275g00002 Stsc-Chr275 11903 13832 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc275g00002 36 361 Receptor kinase-like Gene Family AT1G53430 43.902 5.76e-90 289
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Stsc275g00002 PK_Tyr_Ser-Thr 2.4e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc275g00002 - - gmx:100813945 516.538