Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc275770g00001 ATGGAGGAGAATCTACCTCCTGGATTCAGATTCCATCCAACAGATGAAGAGCTTATAACATATTATCTAACAAGGAAAGTCTCTGAAAATGGATTCTCTTCTAAAGCTATTGCTGTTGTTGATCTCAACAAGTCTGAGCCTTGGGATCTTCCAGGAAAGGCAAGCATGGGTGAGAAGGAATGGTACTTCTTCAGCTTAAGAGATAGAAAATATCCAACAGGACTAAGAACAAATAGGGCCACAGAATCTGGGTATTGGAAGACCACTGGCAAAGACAAAGAGATTTTTCGTGGTGGGGTTTTGGTTGGAATGAAGAAAACCCTAGTTTTCTATAAGGGTAGAGCTCCAAGGGGTGAGAAAACCAATTGGGTCATGCATGAATATAGACTTGACAACAAGCATCCCTTTAGACCTAAGG 418 0.4139 MEENLPPGFRFHPTDEELITYYLTRKVSENGFSSKAIAVVDLNKSEPWDLPGKASMGEKEWYFFSLRDRKYPTGLRTNRATESGYWKTTGKDKEIFRGGVLVGMKKTLVFYKGRAPRGEKTNWVMHEYRLDNKHPFRPK 139
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc275770g00001 139 FunFam NAC domain-containing protein 100-like 14 138 - -
Stsc275770g00001 139 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 1 132 - -
Stsc275770g00001 139 Pfam No apical meristem (NAM) protein 6 130 IPR003441 GO:0003677|GO:0006355
Stsc275770g00001 139 SUPERFAMILY NAC domain 3 135 IPR036093 GO:0003677|GO:0006355
Stsc275770g00001 139 ProSiteProfiles NAC domain profile. 5 139 IPR003441 GO:0003677|GO:0006355
Stsc275770g00001 139 Gene3D NAC domain 14 138 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc275770g00001 Stsc-Chr275770 1823 3079 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc275770g00001 1 138 NAC Transcription Factor Family AT3G18400 84.783 4.83e-88 257
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Stsc275770g00001 NAM 2.9e-42 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc275770g00001 - - aip:107644305 287.345