Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc275731g00001 ATGGGAGAAATAACACAAGGAGAGCGAATTTTAGAAGCATTGAGCAACAAAGAACAAGAAGAAGAAGCACAAGCCCAAATAGAAATATGGAAATACATTTTTGGGTACGTGGAATTGGCAGTTATAAAATGTGCCATTGAACTTGGCATAGCTGATGCCATTGAAAGCCATGGTAGTCCCATGACACTTTCCCAACTTTCATCAGCATTAGCCTCTGATGCTTCCCTTCTTAACCGAATCTTGAGATTCTTGAGTAACAGAAAGATATTCAAAGCCGTTAAAAAAGATTCAGATTCAGATTCCAACACCACTTATTACGCCAATACCGCGTTATCCCGCCGCCTGGTAAAACGCGGGCAGCAAAGCATGGCCTCGTTTCTCCTCCTGGAGAGCAGTCCGGTCATGCTTGCGCCCTGGCACAGCCTGAGCGCCCGCGTTTCTGTCAACAACGGCGGGATAGCTAACTTCCCTTTCGAGAAGGCACACGGCGAAGACGTTTGGTGCTTCGCCGCGGAGAATCCTGGCCACAGCAACCTTATAAACGAGGCAATGGCGTGCAGTGCTAAGATCGTGGTGCCGGCCATCGTTGAAGGTTGTGGTGGCGAGGTGTTTGGCGACGTGAAAACGGTGGTGGATGTTGGTGGTGGAAACGGGACGGCGATGAGAGTTTTGGTTAAGGCTTGCCCATGGATTAGAGGAATCAATTTTGATCTTGCTCATGTCATTGCTGTGGCTCCGGAGTCTGAAGGAGTTCAAAATGTGGCTGGTGACATGTTTCTTGGTGTTCCCAAAGCTGATGCTGCTTTTATTATG 813 0.4822 MGEITQGERILEALSNKEQEEEAQAQIEIWKYIFGYVELAVIKCAIELGIADAIESHGSPMTLSQLSSALASDASLLNRILRFLSNRKIFKAVKKDSDSDSNTTYYANTALSRRLVKRGQQSMASFLLLESSPVMLAPWHSLSARVSVNNGGIANFPFEKAHGEDVWCFAAENPGHSNLINEAMACSAKIVVPAIVEGCGGEVFGDVKTVVDVGGGNGTAMRVLVKACPWIRGINFDLAHVIAVAPESEGVQNVAGDMFLGVPKADAAFIM 271
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc275731g00001 271 Gene3D - 14 115 IPR036388 -
Stsc275731g00001 271 Pfam O-methyltransferase domain 139 270 IPR001077 GO:0008171
Stsc275731g00001 271 ProSiteProfiles SAM-dependent O-methyltransferase class II-type profile. 30 271 IPR016461 GO:0008168
Stsc275731g00001 271 PANTHER O-METHYLTRANSFERASE 25 269 IPR016461 GO:0008168
Stsc275731g00001 271 Pfam Dimerisation domain 41 85 IPR012967 GO:0046983
Stsc275731g00001 271 Gene3D Vaccinia Virus protein VP39 117 271 IPR029063 -
Stsc275731g00001 271 FunFam O-methyltransferase family protein 13 115 - -
Stsc275731g00001 271 Coils Coil 4 24 - -
Stsc275731g00001 271 SUPERFAMILY "Winged helix" DNA-binding domain 19 118 IPR036390 -
Stsc275731g00001 271 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 120 270 IPR029063 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc275731g00001 Stsc-Chr275731 123 982 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc275731g00001 42 270 Monolignol Biosynthesis Gene Families AT5G54160 31.624 1.93e-35 128
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc275731g00001 K22588 - gmx:100782951 310.071