Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc275500g00001 ATGGCTCTACCTTATTATTTATTGTTGCTGTTCTTGCTCATCATCTTGTTTCCAGTTAGGCATGCTGTAAATGAGAAGCAACAGAACTGTCCCCGCTCCTTTGATTGTGGAGACCGTGGCAGATTCCAGTACCCTTTCACCAAGGCTGAACTCCCTCACTGTGGCTTGCTATTCATTCATGGCTGTGACAATCCTAATTACTATTCGCTCAAAACCATCCAACTGGAGAAGAACGGAACAAGCTTAGTGCTTACAGGCCCCCTTGACTCAAATAGTATCATCACGGTATATGATGGAGATTTTCACGCGCGTTTGGAACAGAACAAATGTCACGCTTTGGGCACTACATATACTCTTCCTCCACCTTCTCCTTTGCTCTCTATTTATGTCCAATACAATGTGACTCTATTCCGATGCAATCACAAACTTGGAATAAAGCGTCCTTCGTATTATGGAAACCAAACATGTGGTGACTACGATATCTACTATGATAAAAACAATACGTCTCCCACTATACACGATGCCGGTGGCATTTTCTCACACTGCACACTTGTTCATTTTGCTACAAAAGATGACATCAATACCACAGATGTTCTATCCTTTGTATCTTCTGAGATAGAACTTGAAGTGGTATTATCTCCTGATTGTGATCATTGCTTCAATCGCAGACGAGGTCAATGTCAGCTTGACACTAACAACAAATTTTACTGTGACAAAGTGCCAAAGGATGATAACAAGAAAGCCTTGAAGCTCGGACTCGGAATAGGTTTAGGCATGAGTTCACTGCTAGGAATTTTGATCATTGGATGCTTCCTTAGACGACGTTATCAAAGAAAACATGTTCCTTCAGACCTCCAATACCTATCAAAAAGCACATACAGTGATGCAAATCCAGAGGCAGAAAGCAGGAGGGGCTACTTTGGAGTCCCTCTCTTCTCTTACAAGGAGCTCAAAGAAGCCACAAAGAATTTCCACCACACCACCCAACTTGGACAGGGAGGGTTTGGAACAGTTTACTATGGAAAACTGCGAGATGGACGGGACATTGCGGTAAAGCGCCTTTATGAACACAACTACAGGAGAATGGAACAGTTTATGAATGAAATCGTTATCCTCGCTCGCTTGCGCCATAAGAATCTAGTATCCCTCTATGGCTACTGCACTTCTCCTCACAGGAGTGAGCTACTTCTTGTGTATGAGTTTGTTGAAAATGGCACGGTGGCTTCTCATATCCACGGTGAACTACTGCCGTGGCATATAAGAATGAAAATTGCCATAGACACCGCCATTTCATTGTCTTATCTCCATGCTTCTGACATAATCCACCGCGATGTCAAAACAAACAACATTCTTCTTGACAACAACTTTTGTGTTAAGGTTGCGGATTTTGGCCTCTCAAGACTATTCCCCAATGATGTCACACATGTCTCCACAGCACCACAAGGGACTCCAGGTTATGTTGATCCTGAATATCACCGCTGCTACCAGCTTACTAGCAAGAGTGATGTTTATAGTTTCGGAGTAGTCCTCGTTGAGCTTATATCTTCTAAGCCTGCTGTTGACATGGAGAGGCATACGGATGAGATTAATTTGTCTGAGTTAGCCATAAAGAAGATACAAAACGGTGCATTGAGTGAGTTGGTTGATCCTACTCTTGATTTTGATTCGGATGATGAGGTTAAGAGGATGATAGTGTCAGTGGCAGAGTTGGCTTTTCAGTGTTTGCAACGGGACAGGGAACTTAGACCTACGATGGATGAGGTTTTGAAGGTGTTGATCACAATTGAAAGTGGAAAGGCTAAAGATGAACACATTGAAGAAGTAGATATACATACATCATCATTCCCATCCCCAGCTTCACCAGATTCGCAAGAAGTTGGATTACTGAAGAGCAGGATTCTACTGCCTTCACCAAAAGCAGTAACTGATAGATGGAACAGTGAATCAACTACATCTAATTTCAGTGCTTAA 1971 0.4262 MALPYYLLLLFLLIILFPVRHAVNEKQQNCPRSFDCGDRGRFQYPFTKAELPHCGLLFIHGCDNPNYYSLKTIQLEKNGTSLVLTGPLDSNSIITVYDGDFHARLEQNKCHALGTTYTLPPPSPLLSIYVQYNVTLFRCNHKLGIKRPSYYGNQTCGDYDIYYDKNNTSPTIHDAGGIFSHCTLVHFATKDDINTTDVLSFVSSEIELEVVLSPDCDHCFNRRRGQCQLDTNNKFYCDKVPKDDNKKALKLGLGIGLGMSSLLGILIIGCFLRRRYQRKHVPSDLQYLSKSTYSDANPEAESRRGYFGVPLFSYKELKEATKNFHHTTQLGQGGFGTVYYGKLRDGRDIAVKRLYEHNYRRMEQFMNEIVILARLRHKNLVSLYGYCTSPHRSELLLVYEFVENGTVASHIHGELLPWHIRMKIAIDTAISLSYLHASDIIHRDVKTNNILLDNNFCVKVADFGLSRLFPNDVTHVSTAPQGTPGYVDPEYHRCYQLTSKSDVYSFGVVLVELISSKPAVDMERHTDEINLSELAIKKIQNGALSELVDPTLDFDSDDEVKRMIVSVAELAFQCLQRDRELRPTMDEVLKVLITIESGKAKDEHIEEVDIHTSSFPSPASPDSQEVGLLKSRILLPSPKAVTDRWNSESTTSNFSA 656
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc275500g00001 656 CDD STKc_IRAK 330 592 - -
Stsc275500g00001 656 FunFam Wall-associated receptor kinase-like 20 402 605 - -
Stsc275500g00001 656 Pfam Protein kinase domain 324 590 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc275500g00001 656 Gene3D Transferase(Phosphotransferase) domain 1 402 609 - -
Stsc275500g00001 656 ProSitePatterns Serine/Threonine protein kinases active-site signature. 440 452 IPR008271 GO:0004672|GO:0006468
Stsc275500g00001 656 SMART serkin_6 324 593 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc275500g00001 656 Gene3D Phosphorylase Kinase; domain 1 295 401 - -
Stsc275500g00001 656 FunFam serine/threonine-protein kinase PBS1-like 290 401 - -
Stsc275500g00001 656 ProSitePatterns Protein kinases ATP-binding region signature. 330 352 IPR017441 GO:0005524
Stsc275500g00001 656 ProSiteProfiles Protein kinase domain profile. 324 595 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc275500g00001 656 PANTHER LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-LIKE 1.4 8 649 IPR044652 GO:0004672
Stsc275500g00001 656 SUPERFAMILY Protein kinase-like (PK-like) 303 593 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc275500g00001 Stsc-Chr275500 898 3178 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc275500g00001 22 656 Receptor kinase-like Gene Family AT1G25390 47.913 3.75e-175 511
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK_LRK10L-1 Stsc275500g00001 Pkinase 6.4e-50 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc275500g00001 - - gmx:100791822 771.926