Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc275484g00001 ATGGAAGGTTTCCAAGACACACTCTACGTCCAATCCCAATGCCAATTCTTCCGTGACTGCACCATCACAGGCACCGTTGACTTCATCTTTGGGGACGCAGTTAGAGTCTTCCAAAACTGCAAGCTCCTTGTCAAGAAGCCCATGTCTAACCAACAATGCATGGTCACAGCCGGTGGAAGAACCAAAGTTGACAGCCCAACTGCCCTTGTTTTCCAGAGCTACTACTTCACTGGGGAGCCTCAACTTGCAAGCTTGAACCCCAAGATTGCTTACTTGGGTCGCCCATGGAGGACTTACTCCAAGGTGGTTATCATGGACTCCATCATTGATGATATCATTGTGCCTGAAGGGTACATGCCATGGATGGGAAGTGCATACAAGGACACGT 388 0.4923 MEGFQDTLYVQSQCQFFRDCTITGTVDFIFGDAVRVFQNCKLLVKKPMSNQQCMVTAGGRTKVDSPTALVFQSYYFTGEPQLASLNPKIAYLGRPWRTYSKVVIMDSIIDDIIVPEGYMPWMGSAYKDT 129
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc275484g00001 129 Pfam Pectinesterase 1 127 IPR000070 GO:0030599|GO:0042545
Stsc275484g00001 129 PANTHER PECTINESTERASE 1 122 - -
Stsc275484g00001 129 ProSitePatterns Pectinesterase signature 2. 22 31 IPR033131 -
Stsc275484g00001 129 SUPERFAMILY Pectin lyase-like 2 126 IPR011050 -
Stsc275484g00001 129 Gene3D - 1 129 IPR012334 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc275484g00001 Stsc-Chr275484 3273 3660 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc275484g00001 1 123 Carbohydrate Esterase AT5G49180 53.968 4.61e-46 154
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc275484g00001 K01051 - gmx:100800194 223.787