Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc275403g00002 ATGGTGCAGCTAAATATTTTTGTGACACTGCAGAATATGTTTACAGCTGGAACAGACACGTCATCAAGCACTGTAGAATGGGCCATTGCAGAACTAATAAGGAACCCAAGAATCATGGCCCATGTCCAGAAAGAATTAGACAGTGTTGTAGGAAGGGAAAGGTATGTGACTGAAGAGGACTTGCCCCATTTGCCATATCTTCAAGCTGTGGTCAAAGAAACCTTCCGTTTGCACCCATCAACCCCACTTTCCCTCCCAAGGGTGGCAGCAAATAGCTGTGAGATCTTAGGGTATCACATCCCAAAGGGTGCAACACTCTTGGTCAATGTTTGGGCCATAGCCCGTGATCCAAAGGAATGGGCTGAACCATTAGAGTTCAGGCCCGAGAGGTTTCTAAAGGGTGGTGAGAAGCCTGATGTTGATGTTAGGGGGAATGACTTTGAAGTCATTCCCTTTGGTTCTGGGAGAAGGATATGTGCTGGGATGAGTCTTGGGCTTAGAATGGTTCAACTGTTGACAGCAACACTGGCCCATTCATTTGATTGGGAGTTAGAGGATGGGCTTAAACCAGAGAAGCTGAATATGGATGAAGCATATGGGCTTACCCTTCAAAGAGCTGTGCCTCTTTCGGTGCACCCAAGGCCCAGGCTTTCCTCACATGTGTACTCATCATCTGAATAA 681 0.4684 MVQLNIFVTLQNMFTAGTDTSSSTVEWAIAELIRNPRIMAHVQKELDSVVGRERYVTEEDLPHLPYLQAVVKETFRLHPSTPLSLPRVAANSCEILGYHIPKGATLLVNVWAIARDPKEWAEPLEFRPERFLKGGEKPDVDVRGNDFEVIPFGSGRRICAGMSLGLRMVQLLTATLAHSFDWELEDGLKPEKLNMDEAYGLTLQRAVPLSVHPRPRLSSHVYSSSE 226
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc275403g00002 226 Pfam Cytochrome P450 4 196 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc275403g00002 226 Gene3D Cytochrome P450 3 221 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc275403g00002 226 FunFam Putative cytochrome P450 superfamily protein 5 215 - -
Stsc275403g00002 226 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 152 161 IPR017972 GO:0005506|GO:0016705
Stsc275403g00002 226 PRINTS P450 superfamily signature 16 33 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc275403g00002 226 PRINTS P450 superfamily signature 150 159 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc275403g00002 226 PRINTS P450 superfamily signature 159 170 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc275403g00002 226 PRINTS P450 superfamily signature 69 80 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc275403g00002 226 SUPERFAMILY Cytochrome P450 5 216 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc275403g00002 226 PANTHER CYTOCHROME P450 98A9 6 223 - -
Stsc275403g00002 226 PRINTS E-class P450 group I signature 5 22 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc275403g00002 226 PRINTS E-class P450 group I signature 68 86 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc275403g00002 226 PRINTS E-class P450 group I signature 109 133 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc275403g00002 226 PRINTS E-class P450 group I signature 159 182 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc275403g00002 226 PRINTS E-class P450 group I signature 25 51 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc275403g00002 226 PRINTS E-class P450 group I signature 149 159 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc275403g00002 Stsc-Chr275403 2370 3050 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc275403g00002 6 223 Cytochrome P450 AT5G07990 71.101 1.00e-114 335
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc275403g00002 K05280 - gmx:547475 380.563