Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc275388g00002 ATGCTAATGGGCATATGGGGGATGGCGGGAGTAGGTAAAACAACCATTGCCAAAGCTGTTTACAATCATGTTCGTCACAATTTTGATAGTGCATTGTTCCTCCCAAACATTAGGGAGATGTGGAAGAATAACAAACAAATTTTTCTGCAAGAACAAGTGTTGAATCGTATTTGCAAGGCAGGGATAAACATACAAAACATTGCATCAGGGGTAGCTGAATTAAAGCAAAGACTTCCCCAAAAAAGGGTATTTATTGTACTCGATGATGTAGATAAGATAGATCAGCTGGAAGCCTTGTGCGGAAGTCGAGGATGGTTTGGTGCAGGGAGTAGAATAATCATCACAGCAAGAGATAGACGTCTGCTTCGAATGAAAGAAGTTGATCACGACTACCAAGTGGAACAAATGAATAACCATGAGTCCCTTGAACTTTTTAGTTGGAATGCATTTAATCATCCAACTCCTTCAGTACAGTTTTCTAGACTTGCACTTGAAACAGTTAAAAATTGCGAGGGGATGCCATCAGCCATTGTAACAGTTGGTCGTGAATTGTTTGGAAAGACGAAACTAGTTGAGTGGGAGAATGTAATAGAAGAACTCAAAGCTTTTTCCCGTCAGCAAGGATACGAAGCCTTGAAAATAAGCTATGATAGCTTAAATGAAGATAGAAAGAAAGAGATATTTCTTAATATAGCTAGCTTTTGTATTGGCATGGAAAGAGAGGAGGTACTGCAAACTCTAAGGGAAGCCTTTGATATTCCACTTGAGAATATTAGTTTCCTTGGACAGCGTGGTCTTATAACATTTGATCAACAAGGCAGAGTTCAAATGCATCATTTGTTGCAAGAGATGGCAAGAGAAATCCTTCGAGAGCTATCACAAACTCAGGCTCAGAGCACGCCGCAACTAGCTAAAAGAGAAATTAAGCCGGTGTCTATGCGCAGCAAAAATCCGACACCATTTCCCACCGAGAATTAA 978 0.4018 MLMGIWGMAGVGKTTIAKAVYNHVRHNFDSALFLPNIREMWKNNKQIFLQEQVLNRICKAGINIQNIASGVAELKQRLPQKRVFIVLDDVDKIDQLEALCGSRGWFGAGSRIIITARDRRLLRMKEVDHDYQVEQMNNHESLELFSWNAFNHPTPSVQFSRLALETVKNCEGMPSAIVTVGRELFGKTKLVEWENVIEELKAFSRQQGYEALKISYDSLNEDRKKEIFLNIASFCIGMEREEVLQTLREAFDIPLENISFLGQRGLITFDQQGRVQMHHLLQEMAREILRELSQTQAQSTPQLAKREIKPVSMRSKNPTPFPTEN 325
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc275388g00002 325 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 3 229 IPR027417 -
Stsc275388g00002 325 Gene3D - 1 130 IPR027417 -
Stsc275388g00002 325 SUPERFAMILY "Winged helix" DNA-binding domain 210 293 IPR036390 -
Stsc275388g00002 325 PRINTS Disease resistance protein signature 77 91 - -
Stsc275388g00002 325 PRINTS Disease resistance protein signature 170 184 - -
Stsc275388g00002 325 PRINTS Disease resistance protein signature 2 17 - -
Stsc275388g00002 325 Pfam NB-ARC domain 2 206 IPR002182 GO:0043531
Stsc275388g00002 325 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 3 298 IPR044974 GO:0006952
Stsc275388g00002 325 Gene3D - 135 220 IPR042197 -
Stsc275388g00002 325 MobiDBLite consensus disorder prediction 295 325 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc275388g00002 Stsc-Chr275388 1690 2825 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc275388g00002 3 299 WRKY Transcription Factor Family AT5G45050 35.786 2.31e-48 172
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc275388g00002 - - ahf:112727946 380.178