Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc275254g00001 GTCACACAATTTGTATCACGTCAAAAACACACAAAGAAGTATATACTTGTTCACTGTACTCATGGACATAATCGTACTGGATACATGATCATCCATTATCTAATGCGGACTACATCAATGTCTGTTAGTCAGGCAATAAAAACATTTTCTGATGCACGCCCTCCAGGAATCTACAAACCTGATTACATTGATGCATTGTATGCATTTTACCATGAAAAAAAGCCTGAGATGGTAAATTGTCCTCCTACCCCAGAATGGAAGAGATCTTCTGAACTTGATCTCAATGGTGAAGCAGTTCCAGACGATGATGATGATGGAGAACCAGGACCCAATTTGAATGAGAACCATGAGACAGACACACGGTTGACAAATGATGATGTTTTGGGAGATGAGATACCTTCTGATCAGCAGGATGCATTCCGGCAGTTCTGTTATCAAACACTTAAATTGGGTGTTGGGCCCAGGGGACACACACAATTTCCAGGTTCACATCCAGTTTCTCTTAACAGGGAGAATTTGCAGTTGTTACGACAACGTTATTATTATGCAACATGGAAAGCTGATGGTACAAGATATATGATGCTAATAACGATGGA 596 0.4027 VTQFVSRQKHTKKYILVHCTHGHNRTGYMIIHYLMRTTSMSVSQAIKTFSDARPPGIYKPDYIDALYAFYHEKKPEMVNCPPTPEWKRSSELDLNGEAVPDDDDDGEPGPNLNENHETDTRLTNDDVLGDEIPSDQQDAFRQFCYQTLKLGVGPRGHTQFPGSHPVSLNRENLQLLRQRYYYATWKADGTRYMMLITM 198
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc275254g00001 198 Gene3D DNA ligase/mRNA capping enzyme 116 198 - -
Stsc275254g00001 198 Pfam Dual specificity phosphatase, catalytic domain 1 70 IPR000340 GO:0008138|GO:0016311
Stsc275254g00001 198 SUPERFAMILY DNA ligase/mRNA capping enzyme, catalytic domain 125 196 - -
Stsc275254g00001 198 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 8 87 IPR029021 -
Stsc275254g00001 198 PANTHER MRNA-CAPPING ENZYME 1 197 - -
Stsc275254g00001 198 MobiDBLite consensus disorder prediction 109 124 - -
Stsc275254g00001 198 Pfam mRNA capping enzyme, catalytic domain 164 197 IPR001339 GO:0004484|GO:0005524|GO:0006370
Stsc275254g00001 198 ProSitePatterns Tyrosine specific protein phosphatases active site. 17 27 IPR016130 GO:0016311|GO:0016791
Stsc275254g00001 198 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 1 64 IPR000387 GO:0016311|GO:0016791
Stsc275254g00001 198 Gene3D Protein tyrosine phosphatase superfamily 1 107 IPR029021 -
Stsc275254g00001 198 MobiDBLite consensus disorder prediction 94 124 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc275254g00001 Stsc-Chr275254 1 2974 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc275254g00001 1 197 Protein tyrosine phosphatase (PTP) family AT3G09100 73.267 1.15e-101 305
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc275254g00001 K13917 - gmx:100776633 371.703