Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc275138g00002 ATGTCGCCGTCGAACGGAAACAGCAGCAAGATCCGGCGAATCGTACGGATCCGGCAGATGCTAATGCGGTGGCGGAAGAAGGCTGCGGGTAGAGCGGCGGCGGATGTGCCGGCGGGACACGTGGCGGTGTGTGTTGGCCCTAGCATGAGGAGGTTCATTGTGCGCGCCACGCACCTGAATCACCCGATCTTCCAGAAGCTTCTACTGCGAGCGGAAGAAGAATACGGTTTCTGCAACCGTGGACCTCTCGCTATTCCTTGCGACGAAGAGATATTCGAGGAGCTTCTTCGGGTAATGGCCCGTCCCGAATCCGTTTTCGCCGCTTCTCTCGAAGAGTTCCAGAGAAGGTGCCACGTGGACTTCCGAAGTAACGTGACTGGTAGTGGTAAAAACGGTGGAGGCGGTGGCGGTGGTGGTTTTGACTTTGTAGGAGAATCGTGGCCGTTGCTTCACGACGAGTTGATTTACTGA 471 0.5669 MSPSNGNSSKIRRIVRIRQMLMRWRKKAAGRAAADVPAGHVAVCVGPSMRRFIVRATHLNHPIFQKLLLRAEEEYGFCNRGPLAIPCDEEIFEELLRVMARPESVFAASLEEFQRRCHVDFRSNVTGSGKNGGGGGGGGFDFVGESWPLLHDELIY 156
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc275138g00002 156 Pfam Auxin responsive protein 18 98 IPR003676 GO:0009733
Stsc275138g00002 156 PANTHER AUXIN-INDUCED PROTEIN-LIKE-RELATED 23 95 IPR003676 GO:0009733
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc275138g00002 Stsc-Chr275138 3590 4460 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc275138g00002 6 124 Calmodulin-binding Proteins AT4G34750 51.515 2.52e-40 131
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc275138g00002 K14488 - gmx:100795345 197.593