Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc2750g00001 ATGTCCAGAGAAAGGGAGAGATTTGAGGAGATAGGGAAGAAGATAAAGAGGGAAGGAGATAATAATGTTTCAAGTCAAATGGGAAGAAGACACATGTTAGGGCCACCAGGAACCCTAAACACAATTACACCATGTGCAGCATGCAAGCTATTAAGACGAAGATGCGCCCAAGAATGCCCTTTCTCTCCCTATTTCTCTCCTCATGAGCCTCAAAAGTTTGCTTCTGTCCACAAAGTCTTTGGTGCCAGCAACGTCTCCAAGATGCTCATGGAGGTACCGGAGTGTCAAAGAGCGGATGCAGCGAATAGTCTTGTTTATGAGGCAAATGTGAGGCTAAGAGATCCGGTTTATGGATGCATGGGTGCAATTTCAGCATTGCAGCATCAAGTTCAATCTTTACAAGCTGAACTCAATGCAGTGAGGTCAGAAATTCTTAAATACAAACTCAGAGAAGCTAACAACAATATCATTATTCCCTCATCCTCCCACCACCATCATCTTCCTATGCTCCCTTCATCTGCGGCTGTTTCCGTTGCTGCTCCGCCACCACCGCCTCCTCCTCCTCCTCCACCGCCACCACCACCGCCTCCTAATCCTAATTCTCTTCCTCCCATTACTTCCTCTTCTTCTTCCATGTACATCCAACAACAACAACAGAGGGATCCCACCAACTATAGCAGAATTCCAAGTGACAATCTTTCTTATTTTGGTTAA 714 0.4566 MSRERERFEEIGKKIKREGDNNVSSQMGRRHMLGPPGTLNTITPCAACKLLRRRCAQECPFSPYFSPHEPQKFASVHKVFGASNVSKMLMEVPECQRADAANSLVYEANVRLRDPVYGCMGAISALQHQVQSLQAELNAVRSEILKYKLREANNNIIIPSSSHHHHLPMLPSSAAVSVAAPPPPPPPPPPPPPPPPPNPNSLPPITSSSSSMYIQQQQQRDPTNYSRIPSDNLSYFG 237
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc2750g00001 237 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 40 213 - -
Stsc2750g00001 237 PRINTS Wilm's tumour protein signature 179 193 - -
Stsc2750g00001 237 PRINTS Wilm's tumour protein signature 126 142 - -
Stsc2750g00001 237 ProSiteProfiles LOB domain profile. 43 144 IPR004883 -
Stsc2750g00001 237 MobiDBLite consensus disorder prediction 204 237 - -
Stsc2750g00001 237 Pfam Lateral organ boundaries (LOB) domain 44 141 IPR004883 -
Stsc2750g00001 237 MobiDBLite consensus disorder prediction 175 237 - -
Stsc2750g00001 237 Coils Coil 123 150 - -
Stsc2750g00001 237 MobiDBLite consensus disorder prediction 177 203 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc2750g00001 Stsc-Chr2750 3227 4448 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc2750g00001 29 178 AS2 family AT2G40470 82.667 6.84e-76 226
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Stsc2750g00001 LOB 2.4e-40 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc2750g00001 - - gmx:100790799 301.597