Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc274888g00001 ATGGCTTCATCATCATCTTCAAAGAGGCACCCGCTGTACCATGGAATCAGGTGTCGAGGAAGCAAATGGGTCTCCGAAATCCGGCAGCCACGTCAAGCTTCAAGGATATGGCTGGGGACGTTCCCCACGGCTGAGATGGCGGCTGCCGCCTACGACGTTGCGGCATTAGCACTGAAAGGCGACAGCGCCGTTCTGAACCTTCCTGAGTCAGTTGGGAACTACCAAATTCCGGTAACTAGGTCCCCTGAAGACATCCGGAGAGCTGCCATCGCTGCCGCCGCCTCGATGAAGAAGCCTGATCAAGAACCCACAACCACTCCTCATATTATTGCTGTTAATAATGATAATAACATTGTTGATGATGATGGTACTAATAATAACAACAACAACAATATTATAACTACGACTTTGTGTTCATCATCATCAACATGGTATGATGGGAATGATTTCACGGACGAGGAAGCTATGTTTCGCATGCCAAGTTTGCTGGTGGATATGGCTGAGGGGATGCTTCTGTCTCCGCCGAGAATAATACTGAGCCCGTCGCCGCCATCCTATAACTCCGGTGACGATGGAGACAGTTTGTGGAGTTACTACTTTTGA 603 0.4909 MASSSSSKRHPLYHGIRCRGSKWVSEIRQPRQASRIWLGTFPTAEMAAAAYDVAALALKGDSAVLNLPESVGNYQIPVTRSPEDIRRAAIAAAASMKKPDQEPTTTPHIIAVNNDNNIVDDDGTNNNNNNNIITTTLCSSSSTWYDGNDFTDEEAMFRMPSLLVDMAEGMLLSPPRIILSPSPPSYNSGDDGDSLWSYYF 200
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc274888g00001 200 Gene3D AP2/ERF domain 12 70 IPR036955 GO:0003700|GO:0006355
Stsc274888g00001 200 SUPERFAMILY DNA-binding domain 12 70 IPR016177 GO:0003677
Stsc274888g00001 200 Pfam AP2 domain 12 60 IPR001471 GO:0003700|GO:0006355
Stsc274888g00001 200 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1D 7 198 IPR045277 GO:0003700
Stsc274888g00001 200 SMART rav1_2 12 74 IPR001471 GO:0003700|GO:0006355
Stsc274888g00001 200 CDD AP2 11 70 IPR001471 GO:0003700|GO:0006355
Stsc274888g00001 200 ProSiteProfiles AP2/ERF domain profile. 12 68 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc274888g00001 Stsc-Chr274888 2338 2940 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc274888g00001 7 198 AP2-EREBP Transcription Factor Family AT5G52020 46.193 4.11e-42 140
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Stsc274888g00001 AP2 1.4e-08 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc274888g00001 - - gmx:100811020 182.185