Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc274717g00001 ATGACGTTGCAAGCTGTGGTTTTCCCACAAGATCCACTTTCTTATGCTTGCAATAAGGATAACTATTTGTACTCCATAGATGCAAGTGGTGGATCTTGGAACAACCCTGAAGAATTCTACGGTTTCCAAGAACAACCACCACAAGAAGCAGTGAACAACAACAATAACAATAATAATGTCACAGATTCCATGGACCAATGGGATTCTTACAACTCAAATTCATCCCCTGAGCCCTGCATCACGACGGTTGATCACGATCAATCTTCGCTTCTTCTTGGAGCTAACAATTCCCCTCTTTTGCCTCCCGTGGAAGCGGCCGCAAGCAGCAATACTGTTGCTGCTGCGGCTACCACGGGGAGACGAAAGCGGAGGCGGACGAGGAGCGTGAAGAACAAGGAGGAAATAGAGAACCAAAGGATGACCCACATTGCAGTTGAGCGCAACCGAAGGAAACAGATGAATGAGTACCTGGCTGTACTTAGATCCTTGATGCCTCCTTCTTATGTACAAAGGGGTGATCAAGCATCTATTATTGGTGGAGCAATTAACTTTGTGAAGGAGCTAGAACAGCTTCTTCAGTGCATGAACGGCCAAAAGAAAAGAAAACAAGAACACCACAACAACACTGTACCCTTTGCCGAGTTCTTCATGTTCCCTCAGTACTCAACACATGCTACTCGTAATTGCCACAACAACAGCACGCTGTACCCGCCGCCGTGCGGGGAGGCGGTGACGGAGAAGATATCGTCGCAGTCGGCGGCGGTCGACATAGAAGTGTCGTTGGTGGATAGGCATGCTAACATGAAGATATTGTCAAAGAAGCAACATGGTTTGCTTGTGAAGATGGTTATTGGGCTACAAAACTTGGGTTTCACCATTCTTCACCTTAATGTTACAACCGCTAGTGATATGGTCCTTACCTCAGTTAGTGTTAAGGTAGAAGAAGGGAGTCAGCTGAATACAGTGGATGAAATCGCAGCTTCTGTGAACGAACTATTACATACAATCCATGAAGAAGTTCCTCTCTGCGCTGATCATCAATTATAA 1047 0.4594 MTLQAVVFPQDPLSYACNKDNYLYSIDASGGSWNNPEEFYGFQEQPPQEAVNNNNNNNNVTDSMDQWDSYNSNSSPEPCITTVDHDQSSLLLGANNSPLLPPVEAAASSNTVAAAATTGRRKRRRTRSVKNKEEIENQRMTHIAVERNRRKQMNEYLAVLRSLMPPSYVQRGDQASIIGGAINFVKELEQLLQCMNGQKKRKQEHHNNTVPFAEFFMFPQYSTHATRNCHNNSTLYPPPCGEAVTEKISSQSAAVDIEVSLVDRHANMKILSKKQHGLLVKMVIGLQNLGFTILHLNVTTASDMVLTSVSVKVEEGSQLNTVDEIAASVNELLHTIHEEVPLCADHQL 348
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc274717g00001 348 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 137 188 IPR011598 GO:0046983
Stsc274717g00001 348 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 137 207 IPR036638 GO:0046983
Stsc274717g00001 348 MobiDBLite consensus disorder prediction 110 132 - -
Stsc274717g00001 348 Pfam Helix-loop-helix DNA-binding domain 138 189 IPR011598 GO:0046983
Stsc274717g00001 348 CDD bHLH_AtFAMA_like 140 204 - -
Stsc274717g00001 348 Gene3D - 127 211 IPR036638 GO:0046983
Stsc274717g00001 348 PANTHER MAX DIMERIZATION, MAD 45 339 - -
Stsc274717g00001 348 FunFam Basic helix-loop-helix transcription factor 128 203 - -
Stsc274717g00001 348 Coils Coil 185 205 - -
Stsc274717g00001 348 SMART finulus 143 194 IPR011598 GO:0046983
Stsc274717g00001 348 MobiDBLite consensus disorder prediction 47 75 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc274717g00001 Stsc-Chr274717 1814 4620 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc274717g00001 1 313 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G72210 43.917 2.74e-67 212
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Stsc274717g00001 HLH 7.6e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc274717g00001 - - gmx:100797856 350.517