Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc274703g00001 ATGGAGTCAACCAGTAACACCCTCACTATTTCCTTGTGCTTCTGCTTCTGCTTCATCATCATTCAAGCCAATGTCGTCTTAGCTTCTTCTAATAACTCCAACAATCCATTCCCCAAAGAAGCTCACCCCACAAAATCTGGGTACCTTCCAGTAAGTACCACTTCTTCCTCTGCAATCTTCTATGCTTTCTATGAAGCACAAAACTCAACCATATCTCTCTCCCAAACCCCACTCCTCATTTGGCTCCAAGGTGGCCTAGGCACCTCCTCCATGATCGGCAACCTCTATGAGGTTGGACCCTGGCTTATCACTCAATCCCTCACCCTTCAACCTAACTCTGCTTCTTGGAACAGAATCTTTGGCCTTCTTTTTCTTGACAATCCCATTGGCACCGGATTCAGTGTGGCCTCATCGCCGAACGAAATCCCAACAGATCAAAAGGGTGTTGCCAAGCACCTCTTTGCTTCTATAACAAGGTTTCTTCAGCTTGATCCTGTTTTCAAACACCGCCCTATTTACCTTATTGGGAATAGCTATGGTGGCAAGTATGTGACATCATTAGGATACTACATATTGAAGGAAAATGCAAGAAGATTGAGTGGCTCTCAAAGAGTGAATTTGGTTGGTGTTGTTATTGGGGATGGTGCAACAGAACCAGTTACACAAGTGGCTACTTCTGCTGATAGTGGCTATTATGTTGGTTTAATCAATGAGAAGCAGAAGAGAGAGTTGGAGAAGCTGCAATGGGAAGCAGTTAGGTTGGAACGGATTGGGAATTGGAAGGAAGCAACAGATGCAGTACAGATAGTGTGGAGTAAGTTTCAAGACATGGCAGGGTTGCATTCTTTGTTTGATTACACAATGAGAAAAGACTCTTACCCCTTTTATGATGATTGGATCAATCAATTCATGAACAAAGCTGAGGTCAAGAAGGCATTGGGAGTGAACGAATCACAAGTCTTTAATGTCCACAACGATGTTGTTCATGCAGCATTGAGTGAAGATTTGGCGAAGAGTGTGAAGCACATGGTGGAGCACTTGTTAAGGAGTGGCATACAAGTGTTGTTGTACCAAGGTCAATATGATTTGGTTGGTGGTCCAGTGCAAGTTGAGGCATGGGTGAAGACTTTGAAATGGGAAGGGATTGAGGAGTATCTGAATGCAGAGAGGAAGATATGGAAGGTGAATGGAGAGCTTGCTGGTTATGTCCAACAATGGAAGTCACTCACCAATGTTGTTGTCTTGGGTGGTGGCCATCTTTTGCCTGCTGACCAACCTTTGAATGCTCAAACAATGATTCAAGATTGGGTCTTGCAAAGGGGTATCTTTGGAAATTCACCTTCTTTTAGTTATATTTCAATGTGGAATTAA 1371 0.4347 MESTSNTLTISLCFCFCFIIIQANVVLASSNNSNNPFPKEAHPTKSGYLPVSTTSSSAIFYAFYEAQNSTISLSQTPLLIWLQGGLGTSSMIGNLYEVGPWLITQSLTLQPNSASWNRIFGLLFLDNPIGTGFSVASSPNEIPTDQKGVAKHLFASITRFLQLDPVFKHRPIYLIGNSYGGKYVTSLGYYILKENARRLSGSQRVNLVGVVIGDGATEPVTQVATSADSGYYVGLINEKQKRELEKLQWEAVRLERIGNWKEATDAVQIVWSKFQDMAGLHSLFDYTMRKDSYPFYDDWINQFMNKAEVKKALGVNESQVFNVHNDVVHAALSEDLAKSVKHMVEHLLRSGIQVLLYQGQYDLVGGPVQVEAWVKTLKWEGIEEYLNAERKIWKVNGELAGYVQQWKSLTNVVVLGGGHLLPADQPLNAQTMIQDWVLQRGIFGNSPSFSYISMWN 456
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc274703g00001 456 Gene3D alpha/beta hydrolase 22 444 IPR029058 -
Stsc274703g00001 456 PANTHER SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE 45 426 IPR001563 GO:0004185|GO:0006508
Stsc274703g00001 456 Pfam Serine carboxypeptidase 43 437 IPR001563 GO:0004185|GO:0006508
Stsc274703g00001 456 SUPERFAMILY alpha/beta-Hydrolases 43 438 IPR029058 -
Stsc274703g00001 456 PRINTS Carboxypeptidase C serine protease (S10) family signature 409 422 IPR001563 GO:0004185|GO:0006508
Stsc274703g00001 456 PRINTS Carboxypeptidase C serine protease (S10) family signature 125 135 IPR001563 GO:0004185|GO:0006508
Stsc274703g00001 456 PRINTS Carboxypeptidase C serine protease (S10) family signature 160 185 IPR001563 GO:0004185|GO:0006508
Stsc274703g00001 456 PRINTS Carboxypeptidase C serine protease (S10) family signature 112 124 IPR001563 GO:0004185|GO:0006508
Stsc274703g00001 456 Coils Coil 237 257 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc274703g00001 Stsc-Chr274703 2610 3985 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc274703g00001 305 437 Calmodulin-binding Proteins AT2G22960 23.404 1.38e-07 49.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc274703g00001 K09645 - gmx:100780822 577.4