Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc274613g00001 ATGAGAAGATCCAAGAAGGAATCATATGGTGGGATTTACGCTAACAACAAATGTGTTGAAGCAAGTTGTAGTAATGAGCATAGGTTTTGCTGGGGATGCAGCGAAGAAGCTCATAGACCGGTGAGTTGTGAAACCGCGGCTGAGTGGATCAAGAAGAACCAAGAAGCTGGTGATTCTCAGAGCTTGCTTTGGATCTCTGCTTACACGAAGAAATGCCCACGTTGTAAGAAACCCATTGAGAAAAACGGGGGTTGCATGCACATGAAATGCACTGTTTGCAGCTACCAATTTTGCTGGCTCTGTCTTTCTGATTGGTCTCTCTGTTCCGCCGCCAATAACGGTTGCAACCGTTCTTCAGCCCGGAGTACTGAAAACTCCAGAAGCAACATTGCAAATGTGTCTTTGGATAGGTATAGTCACTACTATGAGCGCTGA 435 0.4575 MRRSKKESYGGIYANNKCVEASCSNEHRFCWGCSEEAHRPVSCETAAEWIKKNQEAGDSQSLLWISAYTKKCPRCKKPIEKNGGCMHMKCTVCSYQFCWLCLSDWSLCSAANNGCNRSSARSTENSRSNIANVSLDRYSHYYER 144
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc274613g00001 144 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 20 122 IPR031127 GO:0004842|GO:0016567
Stsc274613g00001 144 Gene3D - 39 144 - -
Stsc274613g00001 144 ProSiteProfiles TRIAD supradomain profile. 1 119 IPR044066 -
Stsc274613g00001 144 SUPERFAMILY RING/U-box 64 117 - -
Stsc274613g00001 144 Pfam IBR domain, a half RING-finger domain 66 105 IPR002867 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc274613g00001 Stsc-Chr274613 3798 4429 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc274613g00001 20 144 ARIADNE family AT1G05890 48.889 2.44e-36 129
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc274613g00001 K11968 - aip:107632220 184.111