Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc274543g00001 ATGTTCATTGCCGGGACTAATGGGCCAGCAAGTGCGATAGAATGGTCACTAGCAGAGCTCATAAGGAATCCACACACATTAAAGAAAGCGAGAGAAGAAATCGACTCTGTAGTTGGCAAGGACAGACTGGTTAAAGAATCAGACATACCAAATCTTCATTATCTCCAAGCAGTAGTCAAAGAAGCTCTGAGGCTTCATCCAACAATACCAATCTTTGCAAGAGAAGCCATAAGAAGCTGCCAAGTCGAAGGCTATGACATTCCTCAGTACTCCAAAATCTTGATCAATGCTTGGGCCATCGGAAGGGATCCGAATCACTGGGACAACGCCCTCGAGTTCCACCCGGAGAGGTTCTTGCAAACAGAGGAAGAACCTGGGAAAAGTAAAATTGATGTGAGGGGACAATACTATCCGTTATTGCCATTTGGAAGTGGAAGAAGAAGCTGCCCTGGCACTTCGCTCGCATTGCTTGTTATCCAAGGGATGCTGGCGAGTTTGATTCAGTGCTTTGATTGGGTTGTTAATGATGGGAAGAATAATGAGGTTGATATGTCTGAGGAAGGAAGGGTAACTTTGTTTATGGCAAAGCCGTTAAAGTGCAAGCCTGTTATTCGCTTTGTTCCATTCTCATCAGCATGA 639 0.4491 MFIAGTNGPASAIEWSLAELIRNPHTLKKAREEIDSVVGKDRLVKESDIPNLHYLQAVVKEALRLHPTIPIFAREAIRSCQVEGYDIPQYSKILINAWAIGRDPNHWDNALEFHPERFLQTEEEPGKSKIDVRGQYYPLLPFGSGRRSCPGTSLALLVIQGMLASLIQCFDWVVNDGKNNEVDMSEEGRVTLFMAKPLKCKPVIRFVPFSSA 212
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc274543g00001 212 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 142 151 IPR017972 GO:0005506|GO:0016705
Stsc274543g00001 212 PRINTS P450 superfamily signature 4 21 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc274543g00001 212 PRINTS P450 superfamily signature 57 68 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc274543g00001 212 PRINTS P450 superfamily signature 140 149 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc274543g00001 212 PRINTS P450 superfamily signature 149 160 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc274543g00001 212 PANTHER CYTOCHROME P450 98A9 2 205 - -
Stsc274543g00001 212 FunFam Predicted protein 2 200 - -
Stsc274543g00001 212 SUPERFAMILY Cytochrome P450 1 205 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc274543g00001 212 Pfam Cytochrome P450 1 192 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc274543g00001 212 Gene3D Cytochrome P450 1 205 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc274543g00001 212 PRINTS E-class P450 group I signature 96 120 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc274543g00001 212 PRINTS E-class P450 group I signature 139 149 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc274543g00001 212 PRINTS E-class P450 group I signature 149 172 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc274543g00001 212 PRINTS E-class P450 group I signature 56 74 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc274543g00001 212 PRINTS E-class P450 group I signature 13 39 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc274543g00001 Stsc-Chr274543 792 1593 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc274543g00001 1 211 Cytochrome P450 AT2G27000 47.418 3.58e-64 205
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc274543g00001 K24188 - gmx:100037459 353.984