Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc274530g00002 ATGAGTCGAGGGGGTGCAGTTGGAGCTAAGGGAAAGAAGAAGGGTGCAACATTTACCATTGATTGCACAAAACCAGTGGAGGACAAGATTATGGACATTGCTTCTCTTGAGAAGTTCCTTCAAGAGAGGATCAAGGTTGGTGGCAAGGCTGGTGCTCTTGGTGATTCTGTCACTGTCTCCCGTGAGAAGAACAAGATCACTGTCACCTCTGACAGTAACTTCTCCAAGCGGTACTTGAAGTATTTGACAAAGAAGTACTTGAAGAAACACAATGTGCGTGATTGGCTCAGGGTGATTGCTTCTAACAAAGATAGGAATGTCTATGAACTGAGGTACTTCAACATTGCTGAGAACGAAGGAGAGGAACAAGATTAA 375 0.4427 MSRGGAVGAKGKKKGATFTIDCTKPVEDKIMDIASLEKFLQERIKVGGKAGALGDSVTVSREKNKITVTSDSNFSKRYLKYLTKKYLKKHNVRDWLRVIASNKDRNVYELRYFNIAENEGEEQD 124
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc274530g00002 124 PANTHER 60S RIBOSOMAL PROTEIN L22 3 122 IPR002671 GO:0003735|GO:0005840|GO:0006412
Stsc274530g00002 124 Pfam Ribosomal L22e protein family 14 122 IPR002671 GO:0003735|GO:0005840|GO:0006412
Stsc274530g00002 124 Gene3D - 6 124 IPR038526 -
Stsc274530g00002 124 FunFam 60S ribosomal protein L22-2 5 124 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc274530g00002 Stsc-Chr274530 1950 2690 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc274530g00002 1 124 Cytoplasmic Ribosomal Protein Gene Family AT3G05560 87.097 2.04e-68 200
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc274530g00002 K02891 - csav:115723248 216.853