Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc274484g00001 ATGGGGAAGAAAAAGAAGCAAGTAGGAGGAACAAGTGAAGACAAAGGAAATCAAAGCAAAGTTGGAGATAATAGAAGCCAAAAATCATATGATGATGATACCAAGGTGTTTATATCCATGTCTCAAGAGTTGAAAGATGAGGGGAACAAGCTGTTTCAAAATCGGGACTTCCACGGAGCTATGGCAAAATACGAGAAAGCCCTCAAATTGCTTCCAAGCAATCATATAGATGTGTCGAATCTGCGGAGTAACAGGGCTGCTTGCTACATGCAGATGGGACTCATTGAGTACCCGAGGGCGATTCATGAATGTAATTTGGCTCTCGAAGTAACACCGAAATATAGTAAAGCTTTGTTGAAGAGGGCAAGGTGTTATTTAGCTTTAGATAGGCTGGATTTAGCTTTGAGAGATGTGAGTGCTGTTTTGAAGATGGAGCCAAATAATGTCATGGCGTTGGAGGTCTCGGATAAGGTCACGAAAGCACTTCAAGAGAAAGGATTAAGAATCGATGATATGCAAGTTGAGATCCATCCGGAGTATGCACAACCTCCTCATGTTTTGCCACCCAAAAAAGTGGTAAAACAAAAGAACCAAAAGAAGAGCAACAAAGAGAAGGCAAAAGATTCTAATAAAGTTGAAGAGAAACAAGCTGAAGAGAAATCGGAAGAAAAGAAACTTGAGGAAAGTGTTTTGGCAAATAAAGCTGAGGGGAATATTGTGGAGAAGAAGGCTGACAAATCTCAAAAGAAGAAGGCCAAGGAAAAGATTGATGAGAATCAAGCCGAGGAGAAACCAGAAGAAAAGAAACATGACAGTATTTCAGCAAATAAAACCGAGGACGTGGAGAAGAAGGCTAACAAATCTATAATGAAGCAGGCCAGGGAAATAGTTGATGTGAAGCAAGATGATGTTAAGGAGGTTGTTGAGGAAAGGAGCAATGGTGGTAGAAAGGAAGACATACCTAAGAAAACAGCAAAACTTGTTTTCGGTGAGGATATAAGATATGCTGAATTGCCTGTTAATTGTAGCCTCTTTCAGCTAAGAGAAGTGATTCATGACCGGTTCCCGAACCTAGGATCTGTTCTTGTCAAATACAGAGATCAAGAAGGTGATTTGGTCACAATCACTTCTGAAGAAGAATTAAGGTGGGCTGAAACACGATCACAAGTTTCTCTCCGGTTTCACATAGTAGAAACCAATCCTGATCAGGATCCATTATTTACCAAACTTAATGGCATCAAAGCTTCTGAGAATGGTTACATAGAGAAATCAAAGGAAATTGTCAGCTCGTCTTGCATCGAGGATTGGATATTTCAGTTTGCCCAACTTTTCAAGAATCATGTTGGATTTGAGTCTGATAGATATTTAGATTTCCATGATCTTGGGATGAAGCTCTACTCCGAGGCGCTCGAGGAGGCTGTTACAAGTGAAGAAGCACAAGGCCTATTCGACATGGCTGGATATAAGTTCCAAGAGATGGCGGCTCTAGCATTGTTCAACTGGGGAAATGTGCACATGTCCAGGGCAAGGAAGAAAGTGAGTTTCGCCGAAGAATCTTCTAAGGAACAAGTGTATGAACAGATCAAAAGTTCATATGAGTGGTCTCATAAAGAATACAAGAAAGCTGGAGAAAAGTATGAAGAAGCTATTAAAATCAAGTCAGATTTTTATGAAGGCTTCTTGGCTCTAGCACAGCAGCAGTTTGAGCAAGCAAAACTTTCTTGGTACTACGCCGTCAATACCAATGTAGATTTCGCATCATGGCCATCCACTGAGGTTCTTCAGCTTTACAACAATGCAGAGGATAACATGGAGAAAGGAGTGCTGATTTGGGAAGAATCGAAAGAGCAGCACCTAAGTGAAACTTCCAATCCAAGATTACATTTGCAGAAGACAGGTTTCGATGGGCTGCTTACAAGTATATCACCGGATGAAATTGCTGCACAGGAAGCTAATACAAGGTCTCAAATTAATCTCCTATGGGGTACCATGCTATACGAACGCTCGGTTGTTGAATACAAATTAGGCCTGCCAGTATGGCATGAATGTCTGGCAGTAGCAGTTGAGAAGTTTGAACTTGCCGGGGCTTCTCCTACCGATATTGCCGTGATGTTGAAGAACCACTGCTCAAATAACACTGCTGTAGATGGTCTAGGCTTCAACATTGATGAAATAGTTCAGGCATGGAATGAGATGTACGAAGCTAAGAAGTGGCAGAATGGAGTTCCGTCGTTTCGTTTGGAACCCTTATTAAGAAGGAGAGTGTCGAAAATTTATCATGCCTTCGAGCTTGCGTAA 2298 0.4143 MGKKKKQVGGTSEDKGNQSKVGDNRSQKSYDDDTKVFISMSQELKDEGNKLFQNRDFHGAMAKYEKALKLLPSNHIDVSNLRSNRAACYMQMGLIEYPRAIHECNLALEVTPKYSKALLKRARCYLALDRLDLALRDVSAVLKMEPNNVMALEVSDKVTKALQEKGLRIDDMQVEIHPEYAQPPHVLPPKKVVKQKNQKKSNKEKAKDSNKVEEKQAEEKSEEKKLEESVLANKAEGNIVEKKADKSQKKKAKEKIDENQAEEKPEEKKHDSISANKTEDVEKKANKSIMKQAREIVDVKQDDVKEVVEERSNGGRKEDIPKKTAKLVFGEDIRYAELPVNCSLFQLREVIHDRFPNLGSVLVKYRDQEGDLVTITSEEELRWAETRSQVSLRFHIVETNPDQDPLFTKLNGIKASENGYIEKSKEIVSSSCIEDWIFQFAQLFKNHVGFESDRYLDFHDLGMKLYSEALEEAVTSEEAQGLFDMAGYKFQEMAALALFNWGNVHMSRARKKVSFAEESSKEQVYEQIKSSYEWSHKEYKKAGEKYEEAIKIKSDFYEGFLALAQQQFEQAKLSWYYAVNTNVDFASWPSTEVLQLYNNAEDNMEKGVLIWEESKEQHLSETSNPRLHLQKTGFDGLLTSISPDEIAAQEANTRSQINLLWGTMLYERSVVEYKLGLPVWHECLAVAVEKFELAGASPTDIAVMLKNHCSNNTAVDGLGFNIDEIVQAWNEMYEAKKWQNGVPSFRLEPLLRRRVSKIYHAFELA 765
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Stsc274484g00001 765 Coils Coil 290 310 - -
Stsc274484g00001 765 CDD PB1 330 396 - -
Stsc274484g00001 765 Gene3D - 323 402 - -
Stsc274484g00001 765 ProSiteProfiles TPR repeat profile. 115 148 IPR019734 GO:0005515
Stsc274484g00001 765 SMART tpr_5 41 74 IPR019734 GO:0005515
Stsc274484g00001 765 SMART tpr_5 79 114 IPR019734 GO:0005515
Stsc274484g00001 765 SMART tpr_5 115 148 IPR019734 GO:0005515
Stsc274484g00001 765 MobiDBLite consensus disorder prediction 238 284 - -
Stsc274484g00001 765 ProSiteProfiles TPR repeat profile. 41 74 IPR019734 GO:0005515
Stsc274484g00001 765 MobiDBLite consensus disorder prediction 1 32 - -
Stsc274484g00001 765 Coils Coil 242 264 - -
Stsc274484g00001 765 Coils Coil 196 229 - -
Stsc274484g00001 765 MobiDBLite consensus disorder prediction 18 32 - -
Stsc274484g00001 765 PANTHER PROTEIN CLMP1 3 763 IPR044517 -
Stsc274484g00001 765 MobiDBLite consensus disorder prediction 199 231 - -
Stsc274484g00001 765 MobiDBLite consensus disorder prediction 180 284 - -
Stsc274484g00001 765 Pfam PB1 domain 324 398 IPR000270 GO:0005515
Stsc274484g00001 765 Gene3D Tetratricopeptide repeat domain 39 168 IPR011990 GO:0005515
Stsc274484g00001 765 SMART PB1_new 322 399 IPR000270 GO:0005515
Stsc274484g00001 765 SUPERFAMILY TPR-like 35 153 IPR011990 GO:0005515
Stsc274484g00001 765 SUPERFAMILY CAD & PB1 domains 324 406 - -
Stsc274484g00001 765 ProSiteProfiles PB1 domain profile. 322 399 IPR000270 GO:0005515
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Stsc274484g00001 Stsc-Chr274484 1016 4835 Dispersed/Transposed
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc274484g00001 24 148 Calmodulin-binding Proteins AT3G25230 32.609 6.23e-10 60.5
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc274484g00001 K26538 - gmx:100807387 944.88