Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc274442g00004 ATGGGAGAGACAGCTTCTGCGGCTGCGTCCACCGTCGACGACGATTTGCTTCTCAAGAATTTCTTCGCCGAAGTCAGCGAAGTCGAGAGGGACAACGAAGTCCTTAGGATTCTGTCTTGTTTCAAGCTGAATCCGTTTGAGTATCTAAACCTTTCATTTGATTCATCACCTGATGAAGTGAAAAAGCAGTACCGCAAGTTGTCTTTGATGGTTCACCCTGATAAATGTAAGCATCCACAAGCAAAGGAGGCTTTTGGAGCTCTAGCAAAAGCCCAACAATTATTACTAGACCAAAATGAAAGAGATTACATTCTCAGCCAGGTCAATTCAGCTAAAGAAGAACTTAGAGTAAAGAGGAAGAAAATGTTGAAGAAAGATACAGCTTCGAAAATTAAGTCCTTGGTTGAAGAGGGGAAATATGATAAACAATATGAACAGTCAGAGGAGTTCCAGAAAGAGCTCAAAATCAAGGTTCGTGAACTATTAACTGAACAAGAATGGAGGAGAAGAAAAATGCAAATGAGGATATCAGAGGAGGAAGGCAGATTAAAAAAGGATGAAGAGGAACAAAAAGAAATGTGGAAAAGGAAGCGTGAGCATGAGGAAGAGTGGGAAGGAACAAGAGAACAGAGGGTGTCCAGTTGGAGAGATTTCATGAAGGGTGGAAAGAAGAACAAGAAAGGAGAACTTCGGCCCCCTAAGCTTAAGACTGAAGATCCAAACAAATCCTACGTTCAGAGGCCTGTCAAAAAAGGTTAG 759 0.4177 MGETASAAASTVDDDLLLKNFFAEVSEVERDNEVLRILSCFKLNPFEYLNLSFDSSPDEVKKQYRKLSLMVHPDKCKHPQAKEAFGALAKAQQLLLDQNERDYILSQVNSAKEELRVKRKKMLKKDTASKIKSLVEEGKYDKQYEQSEEFQKELKIKVRELLTEQEWRRRKMQMRISEEEGRLKKDEEEQKEMWKRKREHEEEWEGTREQRVSSWRDFMKGGKKNKKGELRPPKLKTEDPNKSYVQRPVKKG 252
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc274442g00004 252 Coils Coil 105 125 - -
Stsc274442g00004 252 PRINTS DnaJ domain signature 46 64 IPR001623 -
Stsc274442g00004 252 PRINTS DnaJ domain signature 80 100 IPR001623 -
Stsc274442g00004 252 PRINTS DnaJ domain signature 64 79 IPR001623 -
Stsc274442g00004 252 PANTHER J DOMAIN-CONTAINING PROTEIN SPF31 5 252 - -
Stsc274442g00004 252 SUPERFAMILY Chaperone J-domain 40 102 IPR036869 -
Stsc274442g00004 252 MobiDBLite consensus disorder prediction 175 252 - -
Stsc274442g00004 252 MobiDBLite consensus disorder prediction 175 246 - -
Stsc274442g00004 252 Pfam DnaJ domain 44 101 IPR001623 -
Stsc274442g00004 252 ProSiteProfiles dnaJ domain profile. 44 100 IPR001623 -
Stsc274442g00004 252 CDD DnaJ 44 97 IPR001623 -
Stsc274442g00004 252 Gene3D DnaJ domain 22 104 IPR036869 -
Stsc274442g00004 252 Coils Coil 169 189 - -
Stsc274442g00004 252 SMART dnaj_3 43 100 IPR001623 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc274442g00004 Stsc-Chr274442 2158 5575 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc274442g00004 46 107 C2H2 Transcription Factor Family AT1G74250 36.765 9.70e-06 44.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc274442g00004 K09528 - gmx:100776581 431.024