Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc274338g00002 ATGGATGCACAAAAAACCAACTTAAACCAAACTACATACATCTTCAAATCAAAATTAGCAGACATACCCATCAACAATACCATTCCTCTCCACACTTATTCCTTTCAAAAACTCCCTCAAATATCCCACCACCCTTGTCTCATCACCAGCAGTGGCAAGACATACACCTATGGTGATACCCACCGCGCTTCTAGAAACTTCGCCGTGGGCCTCTTCAATCTCGGAATCCGCAAAGGTGATGTCATCATGATCCTACTCCCAAACTCTCCCGAATTCGTGTTCTCCTTTTGGGCTGCTTCCATGCTTGGTGCAGTTTCCACCATTGCCAACCCTTCTTACAACTCCGCTGAAATTACCAAGCAGCTCAAAGCCACCAAGTCCAAAATCGTCGTTACACGTGCCATGCACGTGCACAAGCTCAAACAAGAGGAGGAAAACACCTTCATAGTCATAACTGTGGACAACCCGCCAGAGAACTGCATGAGTTTCTCGGTGGTTTCTAGAACGGAAGGGACGCTGCCGGAGGTAGATATTAACCCTGACGATGCGGTGACACTGCCATTTTCCTCCGGCACGACGGGCTCACCGAAGGGTGTGGTTCTAACACACAGGAGCCTAATAACAAACATGGCTCAATTGGTTGTTGGAGAAAACCCTAACTTGCACATGAAGGAAGACGATGTAGTGCTTTGCGTTTTACCATTGTTTCACATTTACGCGCTATATTGTGTGATGTTGTGCTCTACGAGAGTAGGGTGTAGGGTGTTGCTGATGGAGAAGTATGAGATGAGGGCGTTGTTGGAGCTTGTAGAGAAGCAGAGGGTTTCGGTTGTGATGGCGGTTCCGCTGTTGGTGGCGGCATTCTCAAAGAACCCTGAGGTGGAGGAGTATGACCTTAGCTCCATCCGGATGGTGATGTCCGGAGGTGCCCCACTTGCAAAGGATATCAATGGAGCTTTCCGTAGTAGGTTTCCTCAAGCAATCCTTAGACAAGCTTTAGGGATGACAGAGTCAGGGCCAGTGATAGCGATGTCATTAGGGTTTGCAAAGTATCCGATGGCAACCAAGTTAGAGTCGTGCGGCAGTGTTGTGAGAAATGCTAAGATGAAGATTATTGACCCTCTAACCGGCTCTTCTCTCCCTTATAATACTTCGGGTGAGATTTGTATTCGAGGTCAACAGATCATGAAAGGATACCTGAATGATGAGAAGGCGTCGGCAGAAGCTATTGATGAAGAGGGTTGGCTTCATACCGGTGATATCGGTTATGTGGATAATAATGATGAGATTTTCATTGTTGATAGACTTAAGGAACTCATCAAATTCAAAGGCTTTCAGGTCGAATCCTCAACGATTGTCCAAAGGACTTCGAAAGGGGGGTCGAGATACGAGGTTTGA 1398 0.4692 MDAQKTNLNQTTYIFKSKLADIPINNTIPLHTYSFQKLPQISHHPCLITSSGKTYTYGDTHRASRNFAVGLFNLGIRKGDVIMILLPNSPEFVFSFWAASMLGAVSTIANPSYNSAEITKQLKATKSKIVVTRAMHVHKLKQEEENTFIVITVDNPPENCMSFSVVSRTEGTLPEVDINPDDAVTLPFSSGTTGSPKGVVLTHRSLITNMAQLVVGENPNLHMKEDDVVLCVLPLFHIYALYCVMLCSTRVGCRVLLMEKYEMRALLELVEKQRVSVVMAVPLLVAAFSKNPEVEEYDLSSIRMVMSGGAPLAKDINGAFRSRFPQAILRQALGMTESGPVIAMSLGFAKYPMATKLESCGSVVRNAKMKIIDPLTGSSLPYNTSGEICIRGQQIMKGYLNDEKASAEAIDEEGWLHTGDIGYVDNNDEIFIVDRLKELIKFKGFQVESSTIVQRTSKGGSRYEV 465
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc274338g00002 465 PANTHER LONG-CHAIN-FATTY-ACID--COA LIGASE 10 450 - -
Stsc274338g00002 465 Pfam AMP-binding enzyme 44 442 IPR000873 -
Stsc274338g00002 465 SUPERFAMILY Acetyl-CoA synthetase-like 29 452 - -
Stsc274338g00002 465 ProSitePatterns Putative AMP-binding domain signature. 186 197 IPR020845 -
Stsc274338g00002 465 Gene3D - 5 436 IPR042099 -
Stsc274338g00002 465 FunFam Long-chain-fatty-acid--CoA ligase FadD 16 437 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc274338g00002 Stsc-Chr274338 4217 7123 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc274338g00002 11 446 Monolignol Biosynthesis Gene Families AT1G65060 61.905 0.0 545
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc274338g00002 K01904 - gmx:547492 570.466