Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc274291g00001 ATGTCTGCCATGGTTTCAGCTTTGACCCATGTTGTCTCTGGTGAAGTTCCAACCAGTGCAGATGATGAATATGTACTTCCAACAAGGGACATGGCTTATTATGGTTCTTTTTCTTCCACGTTTTCTAACTATGTTGTTGGAAGTGGCTCTTCTTCTATCAAGAGAACTAGGGAGCAAGATGATTTATCCTTTATTGACCACTTCTCTTCTTCATCACATGGTGGAGCTTCTTCAACATCCCCAACTACTATTCATACAACAGTGACGAGAGAAAGTTCAAGAGAAAGCGGCAGTGGGAGTGGAGAAATGGGAGGAGGAAACAGAAACAGGGCAGCAGTGTATGAATACAGAGCAAGAGAAGATAATGTGAGAAGATCATCAGAGGAACAAGCAGAGCCAAGAAGGAAATACAGAGGCGTCAGGCAGAGGCCATGGGGCAAGTGGGCAGCCGAGATCAGAGACCCCTTCAAAGCCGCCAGAGTCTGGTTAGGCACCTTCGACACCGCCGAGGCCGCCGCCAGAGCCTACGACCAAGCCGCCCTCCGTTTCAGAGGCAACAAGGCCAAACTCAACTTCCCCGAAAATGTCACGCTCCTCCGCCACGCTCCTCCGCATCCTCCTCCTCCTTCTTCTTCTTCTTTGCTCGTGTCTATTTCGACTTCAACCGATGCCATTGTTCACACTGAACCTCTTATTAGTTTCCATGGTTCTGCTTCTTCTTCTTCTTCTTCGATGGGTTTGTATGGGAATATTGCGATGATGGATCCGAGTCTCATGGTTATGGCGTCAAGTGTGGCTTCTCATCTTCATCATTCTTCTTCATCGTCAACGCAAGCTTCGCCGCCATTCTTGTCTTCGTCTTCTGCGTTCGGTGCGAATGCACAGTTGCCGGCGGCGTGGTCATCAGCTTCCGGTCATAGCTCTTCTTCGTCGGGATAA 939 0.4899 MSAMVSALTHVVSGEVPTSADDEYVLPTRDMAYYGSFSSTFSNYVVGSGSSSIKRTREQDDLSFIDHFSSSSHGGASSTSPTTIHTTVTRESSRESGSGSGEMGGGNRNRAAVYEYRAREDNVRRSSEEQAEPRRKYRGVRQRPWGKWAAEIRDPFKAARVWLGTFDTAEAAARAYDQAALRFRGNKAKLNFPENVTLLRHAPPHPPPPSSSSLLVSISTSTDAIVHTEPLISFHGSASSSSSSMGLYGNIAMMDPSLMVMASSVASHLHHSSSSSTQASPPFLSSSSAFGANAQLPAAWSSASGHSSSSSG 312
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc274291g00001 312 SMART rav1_2 136 199 IPR001471 GO:0003700|GO:0006355
Stsc274291g00001 312 FunFam Ethylene-responsive transcription factor 2 135 194 - -
Stsc274291g00001 312 CDD AP2 136 195 IPR001471 GO:0003700|GO:0006355
Stsc274291g00001 312 MobiDBLite consensus disorder prediction 66 137 - -
Stsc274291g00001 312 ProSiteProfiles AP2/ERF domain profile. 136 193 IPR001471 GO:0003700|GO:0006355
Stsc274291g00001 312 Gene3D AP2/ERF domain 135 195 IPR036955 GO:0003700|GO:0006355
Stsc274291g00001 312 MobiDBLite consensus disorder prediction 113 137 - -
Stsc274291g00001 312 PRINTS Ethylene responsive element binding protein signature 159 175 IPR001471 GO:0003700|GO:0006355
Stsc274291g00001 312 PRINTS Ethylene responsive element binding protein signature 137 148 IPR001471 GO:0003700|GO:0006355
Stsc274291g00001 312 PANTHER DNA-BINDING DOMAIN 91 272 IPR044808 GO:0003700|GO:0009873
Stsc274291g00001 312 MobiDBLite consensus disorder prediction 66 103 - -
Stsc274291g00001 312 Pfam AP2 domain 136 185 IPR001471 GO:0003700|GO:0006355
Stsc274291g00001 312 SUPERFAMILY DNA-binding domain 136 194 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc274291g00001 Stsc-Chr274291 1175 3518 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc274291g00001 1 232 AP2-EREBP Transcription Factor Family AT5G64750 42.683 1.10e-34 128
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Stsc274291g00001 AP2 3.2e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc274291g00001 - - adu:107470342 345.895