Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc274260g00001 ATGCAGCACCAAGAAACCATGAAAATTGTGCAAGTGTTCAAGGCATCACCCTCTTTGTTGGGACCACAAAACTTATTACCACCTTCTTCCACATCTCTTCCTCTAACCTTCTTTGACATACTATGGCTAAGGTTACCACCTGTTCAACGAGTTTTCTTCTATGAATTCCCACACCAACCCTCACTCTTCTATGATGCCATTCTTCCTAAACTCAAACACTCTCTTTCTCTTTCACTTTCTTACTATTTCCCTCTTGCTGGAACCCTCACTTGGCCTCATCATTCCAACAAACCCATCATCACTTACAACCTTGGTGACACACTCTCACTTATCATAGCTGAATCTGATGCTGATTTCAACCATCTTTCAGGTTCTGACCTTTCTGAAGCCTCAAAGCTTCACCATCTTGTTCCTGAATTGACCATTTCCGATGATCAAGCCACCGTCTTTGCCTTACAAGTTACCCTATTTCCGAACTATGGATTCTCCATTGGAGTCACATCACACCATGCTGTTCTTGATGGAAAATCCTCAACATCCTTCATCAAATCTTGGGCTTATATCTGCAATAAGCTAGGAGATTCATCATCACCTATTGATTTGCCTCCAGAATTGAGTCCTTTCTTTGACAGAGAAATTGTGAAAGATCCCAAAGGGCTTGAAGCAAAGTATCTGAGTGATTGGTTAAAGCAAGGTGGACCCAACAACAGAAGCCTCAAGGTTTGGAATCTTCCGGTTCCAGAAGATTCAATAAGGGGTTTGTTCAAACTGTCTAGATCAAACATTGAAAGCCTCAGAAAATTAGTGGTGTCCAAGAAGAAAGAAACTATAAATCTTCACCTGTCAAGTTTTGTGATATCTCTTGCATATACTGTTGTGTGTAAAGCTAAAGCTGAGAAAGTTAACAGCAACAGAGTGTTTGTGGGTGTAAATGTTGATTGCAGAGCAAGATTGGATCCTCCTCTTCCTCCAACTTACTTTGGAAACTGTGGTGGTGCCAGATTTGCGGTTGCTGAAACAAAAGGATTGTTGGGTGAAGATGGAATAGTTGTTGCCGTGGAATCACTGAGTAATGCATTAGAAACTTTGAAGGATGGTGCGCTGAGTGGTGCAGAGAATTGGTCATCACTTATGCATGAAGGTTTGCATAGTGATGATAAGTTTATGAGTGTTGCCGGGACACCAAGGTTTGAGGTTTATGGCAATGATTTTGGGTGGGGAAAGCCAAAGAAGGTAGAGATGGTGTCTATTGATAGAACTGGTGCATTTTGTTTCTCAGATAGCAGCAATGGTGATGGTGTTGAGATTGGTTTGGTCTCCAACAAAGAATCCATGGATGCTTTTGCTTCTCTGTTTCTCCAAGGACTTGCATTTTAG 1377 0.4161 MQHQETMKIVQVFKASPSLLGPQNLLPPSSTSLPLTFFDILWLRLPPVQRVFFYEFPHQPSLFYDAILPKLKHSLSLSLSYYFPLAGTLTWPHHSNKPIITYNLGDTLSLIIAESDADFNHLSGSDLSEASKLHHLVPELTISDDQATVFALQVTLFPNYGFSIGVTSHHAVLDGKSSTSFIKSWAYICNKLGDSSSPIDLPPELSPFFDREIVKDPKGLEAKYLSDWLKQGGPNNRSLKVWNLPVPEDSIRGLFKLSRSNIESLRKLVVSKKKETINLHLSSFVISLAYTVVCKAKAEKVNSNRVFVGVNVDCRARLDPPLPPTYFGNCGGARFAVAETKGLLGEDGIVVAVESLSNALETLKDGALSGAENWSSLMHEGLHSDDKFMSVAGTPRFEVYGNDFGWGKPKKVEMVSIDRTGAFCFSDSSNGDGVEIGLVSNKESMDAFASLFLQGLAF 458
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc274260g00001 458 Gene3D - 246 458 IPR023213 -
Stsc274260g00001 458 Gene3D - 2 235 IPR023213 -
Stsc274260g00001 458 PANTHER - 22 457 - -
Stsc274260g00001 458 Pfam Transferase family 29 450 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc274260g00001 Stsc-Chr274260 4061 5538 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc274260g00001 51 454 Monolignol Biosynthesis Gene Families AT5G48930 25.416 2.06e-20 91.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc274260g00001 - - ahf:112744586 794.267