Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc274250g00001 ATGGCTATATACACTTCAATTTTGATTATAATAATCCAACTTCTCTTGTGTGCCTCCATCAATTCCTACACCACCAAACCTCCTGGAACTCATAGGAATTCAACATCCAAATTGTCACAGTTGGATGAAGAAGCCAATGCTTTGTTTTCTCTTCACTGGTGGAGTATCCAATACAATATCTCAAACCGTTGCAACAATTGGCCCGGTGTTGGGTGCAACAACAATGGAAGCATTACAAAGCTTTCACCACCAAAGGATTCCACCTATGTCTTTAACAGAGACCTCTATGTTAGGGACATCAATTTCTCAGTCTTCTCAAATCTTGTCCACCTTGATCTCAGTCAAATGAATCTATATGAACTCCCTATGGGACTAAGTAGTCTCAAGAAGTTAACACTACTCAATCTGTCCTATAACAATATCCAAGATGAAATCCCTTTCTCATTGGCAAATTTCCCTCAACTTATGGTGTTTGATGTCTCTAACAACCTTATTACTGGTCAGATTCCACATGAAATTGCCAAGCTTGAGAATCTTGTTACATTGGACTTGAGTTTCAACATGTTCAGTGGAACAATTCCACTGAGTTTGAGTCATGTGACTAGTCTCAACCACTTGAGGATATCCAATAACAGACTAGATGGTGAGCTTCCTACAAAGATTCTAAATCTTTCTCAGTTGAAGAATTTTGACCTTTCTCGCAATCGCCTTCTAGGTAAGCTCCCTGCAACATTTGTGAATAACTCCCAGTTACAGAATCTAAACCTTTCTGACAATCGAATAGGCGGTTTCATCCCTCGGGAAATAGGGAAGTTGGCAAATCTTGTAGTTTTAGACCTGAGTTTGAATCAGCTAGAAGGTCCAATTCCTGAGCAAATAGGGTGTCTAAAAAATTTGACAAGTCTCCACCTTGATTCAAATTGGATTAATGGTTCTATACCTTCAAGTATAGGACTTTTAACCCATTTGAATGAGTTAGCAATTGGATTCAACCAAATACCTGGGTTGATTCCTGCTGAATTAGAGCACTTGGTTTATCTGAAAGTTTTGGATATTTCAAATAATGAAATTTCTGGTGGTATACCAAAATGGATATCTGCATTAACACAATTAACAGATATAAGACTACAGGGGAACCATCTTAGTGGTGTTATACCATATGGTATCCTTAATCATTGTATTCATGTGGATCTTAGCCACAACCGTTTAAATGGAAGCATTCCATCTCAAATTGGCCATGATCTTTTATATCTAGACCTTAATAGCAATAACTTGAGTGGCAAGAAACCAAAGGAGCTTGATTCTGTCCCATTCTTCTATCTAAATTGCAATCCCTTTCTTGATGATGGATATTATGACTGCAGTGATCCACAAGATCAATTAGATTATGACCATCATGATAACCATTTTAGGCCATCAAAGGCTTTGGTTTTAATAATTGTGGCCAGTGTTCTCATTTCTTTCGGCTCCATAGGGGTTGGAATTTGTGTTCTTCGTTCCAGGCATCGTCACAAACTCAAAGATAAGGCAGCAAAGCATGGAGATTTGTTCTCAATTTGGAACTATGATGGTAAAATTGCATTTGAGGACATCATTGAAGCGACGGAGGACTTTGATATCAGATATTGCATTGGAGCTGGCTCTTATGGTAGTGTCTACGAAGCTCAACTTCCAAGTGGCAAAACTGTTGCCTTGAAGAAGCTTCACAAAACAGAATCAGAAAATCCATCATTTTACAACAGCTTCTGCAATGAAGTTAAGGTCTTGACAGAGATTCGCCACCGCAACATCATAAGGCTTTATGGCTATTGTTTGCATAACAGATGCATGTTTCTGGTGTATGAATACTTGGAAAGAGGAAGCTTGTTCTATAACTTGGCCAATGAAATTGAAGCTAAAGAGTTGAATTGGAGAAAGAGGGTGAAGATCATTAAAGGGACAGCACATGCTCTTGCTTACATGCATCATCATTGCACTCCTCCTATTGTTCATAGAGATGTCAGCAGCAACAATATTTTGCTGAATTCAGAGTTAGAAGCTTGTGTATCAGATTTTGGCACTGCAAGACTTCTTGATCCTGATTCATCAAATCAAACTCTTCTAGTTGGCACCTATGGATATATTGCTCCAGAATTGGCATACACCATGAGTGTGACTACAAAATGTGATGTGTATAGTTTTGGAGTGGTGGCTTTAGAAACAATGATGGGTCATCACCCAGGAGAATTCATTACCACTATGTCAAAGCCATGTACTCAACAATTATTGATGAAAGATTTGTTGGATCCACGGATTCCACCTCCAACTTGTGGAGAAGATATGCAAGATGTTTTGCTTGTTGTGAAGTTAGCATTAGCTTGCCTCTCCTTAGACCCAAAAATCAGACCATCAATGCAGGATGTGGCCAATGAGATTTTGGCTTCTAAGGCACCAATACTTATCCCTTTCTCTGATGTTTCCATCTACCAATTGATGAATCAAGAAATATATCCCATTGATAAAAAATAG 2508 0.386 MAIYTSILIIIIQLLLCASINSYTTKPPGTHRNSTSKLSQLDEEANALFSLHWWSIQYNISNRCNNWPGVGCNNNGSITKLSPPKDSTYVFNRDLYVRDINFSVFSNLVHLDLSQMNLYELPMGLSSLKKLTLLNLSYNNIQDEIPFSLANFPQLMVFDVSNNLITGQIPHEIAKLENLVTLDLSFNMFSGTIPLSLSHVTSLNHLRISNNRLDGELPTKILNLSQLKNFDLSRNRLLGKLPATFVNNSQLQNLNLSDNRIGGFIPREIGKLANLVVLDLSLNQLEGPIPEQIGCLKNLTSLHLDSNWINGSIPSSIGLLTHLNELAIGFNQIPGLIPAELEHLVYLKVLDISNNEISGGIPKWISALTQLTDIRLQGNHLSGVIPYGILNHCIHVDLSHNRLNGSIPSQIGHDLLYLDLNSNNLSGKKPKELDSVPFFYLNCNPFLDDGYYDCSDPQDQLDYDHHDNHFRPSKALVLIIVASVLISFGSIGVGICVLRSRHRHKLKDKAAKHGDLFSIWNYDGKIAFEDIIEATEDFDIRYCIGAGSYGSVYEAQLPSGKTVALKKLHKTESENPSFYNSFCNEVKVLTEIRHRNIIRLYGYCLHNRCMFLVYEYLERGSLFYNLANEIEAKELNWRKRVKIIKGTAHALAYMHHHCTPPIVHRDVSSNNILLNSELEACVSDFGTARLLDPDSSNQTLLVGTYGYIAPELAYTMSVTTKCDVYSFGVVALETMMGHHPGEFITTMSKPCTQQLLMKDLLDPRIPPPTCGEDMQDVLLVVKLALACLSLDPKIRPSMQDVANEILASKAPILIPFSDVSIYQLMNQEIYPIDKK 835
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc274250g00001 835 SMART LRR_typ_2 368 392 IPR003591 -
Stsc274250g00001 835 SMART LRR_typ_2 296 320 IPR003591 -
Stsc274250g00001 835 SMART LRR_typ_2 128 149 IPR003591 -
Stsc274250g00001 835 SMART LRR_typ_2 272 295 IPR003591 -
Stsc274250g00001 835 SMART LRR_typ_2 176 199 IPR003591 -
Stsc274250g00001 835 SMART LRR_typ_2 200 224 IPR003591 -
Stsc274250g00001 835 Gene3D Ribonuclease Inhibitor 194 290 IPR032675 -
Stsc274250g00001 835 FunFam MDIS1-interacting receptor like kinase 2 617 811 - -
Stsc274250g00001 835 ProSitePatterns Tyrosine protein kinases specific active-site signature. 662 674 IPR008266 GO:0004672|GO:0006468
Stsc274250g00001 835 SUPERFAMILY L domain-like 64 430 - -
Stsc274250g00001 835 Gene3D Ribonuclease Inhibitor 35 193 IPR032675 -
Stsc274250g00001 835 PANTHER LEUCINE RICH REPEAT KINASE 2 37 809 - -
Stsc274250g00001 835 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 220 441 - -
Stsc274250g00001 835 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 100 193 - -
Stsc274250g00001 835 Gene3D Phosphorylase Kinase; domain 1 498 616 - -
Stsc274250g00001 835 SUPERFAMILY Protein kinase-like (PK-like) 523 803 IPR011009 -
Stsc274250g00001 835 Pfam Protein kinase domain 543 803 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc274250g00001 835 Pfam Leucine Rich Repeat 250 272 IPR001611 GO:0005515
Stsc274250g00001 835 Pfam Leucine rich repeat 322 381 IPR001611 GO:0005515
Stsc274250g00001 835 FunFam Leucine-rich repeat receptor protein kinase MSP1 501 616 - -
Stsc274250g00001 835 Gene3D Transferase(Phosphotransferase) domain 1 617 811 - -
Stsc274250g00001 835 Gene3D Ribonuclease Inhibitor 389 449 IPR032675 -
Stsc274250g00001 835 Gene3D Ribonuclease Inhibitor 291 388 IPR032675 -
Stsc274250g00001 835 ProSitePatterns Protein kinases ATP-binding region signature. 544 566 IPR017441 GO:0005524
Stsc274250g00001 835 ProSiteProfiles Protein kinase domain profile. 538 813 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc274250g00001 Stsc-Chr274250 3732 6314 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc274250g00001 95 710 Receptor kinase-like Gene Family AT4G08850 37.888 1.37e-118 382
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Stsc274250g00001 Pkinase 3.1e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc274250g00001 - - aip:110269304 1194.1