Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc274232g00002 ATGTGTGATGTGTACATTAGTTCCGGATTGCTACAACTTCCTTCTTTTACATCATATCTCTTTTCCGCACTCAAAAATGCTGGACTATATGTTTTAGGGAACTACACAGAGCCCAACACTAGTGACCTTAAATTATCTGGCGCAATCGAAGGGAGCAGGGTTTCTATCATAGTTTTCTCAATGTATTATGCTAACTCAACCATGTGTTTGCGGGAGCTCGAGAAAATAATGGAGTGTCGGAGCAGCAGACATCAGCAGGTTGTGCCCGTCTTCTTGGATTTCTTAGATCCCTCAGACGTACGCAATCTGAGCGGTTATTTTGGAGAAGTTTTGTTAGATACTCTTGAAAGAAACTCAACAGATGCAAACAACTTGCTGACTTATAGGACCGCGCTTCGAGAAGCTTCTGCCATTTCACCCAGCTTTCTGCCGAATATCGGGAATGAAAGCAAAGTTATAGAGGATATTGTTGCACATGTCACCTCTTTGCTAGATTCAACAGACTTATTCGTTGCAGAGCATCCAGTGGGAGTAAACTCACGTGTCCAAGATTTGATTCAACTCATAAATAATCACAAATCAGATCATGTTCCTGTAATAGCAATATGGGGAATGGCGGGAATAGGTAAAACAACAATTGCTAAAGCCCTCTACAATCAAATTAGCCGCAATTTTGATGTGAGGAAGTTTGTCCCAGACATCAAGGAAAGGTTGAGGGATATATCCTGGCATCTACACAAGAGTCTTCTTTCCGCTCTCGGGATAAGTGTTAAAAGAAAGGTGCCTAACTTGGACTCAACAAGTCTTACGAGGGATAGTCATTGCAACTCAAAGGTATTTCTTGTAATTGACAATGTGACAAGTGATCTAGAACTCCAGGAGATTTTGTCGCGAGCTGGAGATATTCGTGAATTTTTTGGTCCTGGGAGTGTAGTAATCATCGTGACAAGGGTGGTTAACGCTGATCCATTTTCTGAAATTCAAGTTAATCATATATACAGGGTGAAAGAAATGGACTATAATGAATGTGTTGAGCTTTTTAGTTGGAGCGCATTCAAGAAAGCAACTCCCGAAAGAAGTTTTTCTGGGCTTATTAATTATGCAGTTGAATATTCTGATGGACTGCCACTGGCTCTCATGGCTGTTGGCTCTGCATTATCTAAAAAAAATATGGAAGAGTGGGAGAATTTATTGGATAGGCTCAATAGATTTCCCCTTCAAGATGCATGGCAGATTTTAAAAGAAAGCATTGATTCCGTTGAATATAGTGTGAGGAAAATGTTTTTCGGACTAGCTTATTTGAGTCATTTCCTTATTGGAATGGACCGAAATGATATAAGTCAGTTATTAAAAGAAGCTGGAAATCACGAGGCACCAAGAGCAATTAAAGTGCTTGAAAATCATAGTCTTGTGTGGTTTAACGAAGACAAGCTTTGCATGCATCGTTTGCTACAACACATCGGAAGAGAAATGTATCTGCAGGAATCATCCATTGAGTCTCAG 1503 0.4019 MCDVYISSGLLQLPSFTSYLFSALKNAGLYVLGNYTEPNTSDLKLSGAIEGSRVSIIVFSMYYANSTMCLRELEKIMECRSSRHQQVVPVFLDFLDPSDVRNLSGYFGEVLLDTLERNSTDANNLLTYRTALREASAISPSFLPNIGNESKVIEDIVAHVTSLLDSTDLFVAEHPVGVNSRVQDLIQLINNHKSDHVPVIAIWGMAGIGKTTIAKALYNQISRNFDVRKFVPDIKERLRDISWHLHKSLLSALGISVKRKVPNLDSTSLTRDSHCNSKVFLVIDNVTSDLELQEILSRAGDIREFFGPGSVVIIVTRVVNADPFSEIQVNHIYRVKEMDYNECVELFSWSAFKKATPERSFSGLINYAVEYSDGLPLALMAVGSALSKKNMEEWENLLDRLNRFPLQDAWQILKESIDSVEYSVRKMFFGLAYLSHFLIGMDRNDISQLLKEAGNHEAPRAIKVLENHSLVWFNEDKLCMHRLLQHIGREMYLQESSIESQ 501
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc274232g00002 501 Gene3D - 1 165 IPR035897 -
Stsc274232g00002 501 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 15 491 IPR044974 GO:0006952
Stsc274232g00002 501 Gene3D - 166 326 IPR027417 -
Stsc274232g00002 501 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 163 429 IPR027417 -
Stsc274232g00002 501 Pfam NB-ARC domain 185 420 IPR002182 GO:0043531
Stsc274232g00002 501 PRINTS Disease resistance protein signature 273 287 - -
Stsc274232g00002 501 PRINTS Disease resistance protein signature 199 214 - -
Stsc274232g00002 501 PRINTS Disease resistance protein signature 372 386 - -
Stsc274232g00002 501 SUPERFAMILY Toll/Interleukin receptor TIR domain 3 112 IPR035897 -
Stsc274232g00002 501 Pfam TIR domain 8 162 IPR000157 GO:0007165
Stsc274232g00002 501 ProSiteProfiles TIR domain profile. 1 164 IPR000157 GO:0007165
Stsc274232g00002 501 SMART till_3 1 138 IPR000157 GO:0007165
Stsc274232g00002 501 Gene3D - 338 427 IPR042197 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc274232g00002 Stsc-Chr274232 5952 7627 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc274232g00002 176 496 WRKY Transcription Factor Family AT5G45050 29.573 7.42e-31 125
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc274232g00002 - - ahf:112727909 564.688