Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc274148g00001 ATGGAAGATCGTCGCTTATCACTGGCCTTGTCCTCGCACTCCTCATCCTCAGACTATGGATGGGACTACGATGTGTTCCTCAGCTTCCGAGGTCCAGACACCGGCAAGCATTTCGCCGGAAATCTTTATTATGCTCTCACACAGAGGGGAATCCGGACGTTCTATGCCGACAAAAAGCTCAACAGAGGAGAGGAGCTTCAATCCACACTCCTCAAGAGAATTCAAGAGTCAAAAGTCGCCATCCCTATCTTCTCTAAAGATTATGCTGATTCTGCATTCTGCTTAATTGAACTTGAAGCCATCATGGATACCATGAAGGCAAAGGGACGGTTGGTTTTTCCGGTGTTCTTCGGTGTAAGTGCTTCTGTTGTTCGATTTCAGACTGGATCTTATAAGAAGGCAATGGCTAAGCATGAAGGTAGGTACGACCACCACATCGTGCAGAAATGGAGAGAAGCTCTTCACCAAGCATCTAATTTGTCCGGCAACAGCTTCCATTTTAAGAATGAACATGAACATGAATTTGAGTTGATTGAAAAGATCACTGAAGCGGTCTCCGGAAACGTGAATCGTAGTCTTCTCTGCGTTGCAAAGCATCCAGTTGGATTGGAGCTTCGGATGCAACATGTATGCAAGCTTTTGGATGTAGTACCTGGAGGTGGATGCAATAATAACGAAGTGCGCATGGTTGGAATTCATGGAATTGGCGGAATAGGTAAATCAACTCTTGCTAAAGCTGTTTTTAATTACATAGCTGATCAATTCGACGGCAGATGTTTTCTTGAGAATGTGAGAGAAAATTCAAGTAGGCATGGATTGGAACATCTACAAGAGAAGCTTCTTTATGACATGGTTGGAGAAAACAATATTAGATTAGTAGGCACCAGTGAAGGTGTTCCACTAATAAAGCATAGGCTTCACCAGATGAAGGTTCTTTTGATTCTTGATGATGTTGACCAAGAAAAGCAGTTGCAAGAACTTGCTGGAGGGGTAGATTGGTTTGGTCCTGGTAGCAGAGTCATCATTACAACCCGAGACCAACAAGAAGATGCTCGTAAATTGTTTGAGTGGAAACTGAATAAGAAAGCTGATCCGCATTTTGATCATGTTATAAATCGTGCAGTCACTTATTGTGCAAAGCTTCCATTGGCTTTGGAAATAATAAGTTCTGATTTGGCCACTATAGATGCAGATAAATGGGAATCTGCATTAGGCCATTATGAAAGAACTCTTGGCACAGAAGAAATCTATGGTAAACTAAAGAGAAGCTTTGATCGTTTGGAGAAAGAAGTGCAAAATGTGTTTCTTGACATTGCCTGTTGCCTTAAAGGACTCAGTTTGACAGAGGTCAATGATCTGCTAAGTGCTCATCATCGTTTCTGCCCGGAATATCATATTCCAGTTTTGGTTGATAAATCTCTCATAAAGATTGAAAATAATGTGGTGAAGGTACATGACAAGATACACGAAATGGGTAGAAAAATTGAACAAGAAGGAAATCATGGCTACCGCTATCACTTGTCGTCCTCTGATGCCTTAGTTCAAATTTTTAAACACAAGGAGTTTCAGAACATGAGAGTTTTGAATTTTGATGATGCTAAATGTGTAAAAGCTATACCTAGTCTATCTTCGACCCCAAATCTGGAAGAACTTTCATTCTCAAACTGTGAAAGTTTGACTGAAATTGATGCATCTGTTGGAACGCTGGGGAGGCTTAAGATTTTAAATGTCTCTGGTTGCAACAACCTTAGGAGCTTCCCACCCCTTAATTTTCCATCTATTGAAGAACTCAATTTCAGGTCGTGCTCAAATCTTGAAAGTTTTCCAAAAATCTTAGAAAAGATGGAAACTTTAACCAAGCTTGCTTTAGATTACACGGCCATAAAAGCTATACCTGATCTATTTTCTGCTCACAATTTAGTAGAATTATCATTTTCAAACTGTGTGAATTTGATTGAAGTTGATGTGTCAGTTGGGTTTCTAAGTAAGCTTAGATTACTTAAAGCCTCTGGTTGTTGCAAGCTTAGAAGCTTTCCATCCCTTTTGTTGCCATCTCTTGAAGAACTTGATCTCTCGCATTGTTCAAGCCTCGAGAAATTCCCAGAGATATTAGATAAGATGGACAACTTATCCAAGCTTAATTTAGATGACTCGGGCATAAAAGCTATACCTGATCTATTTTCTGCTCACAATTTAGTAGAATTGTCATTTTCAGACTGTGTGAATTTGATTGAAGTTGATGTGTCTGTTGGGTTTCTAAGTAAACTTAGATTACTTAAAGTCTTTGGTTGTTGCAAGCTTAGAAGCTTTCCTTCCCTTTTGTTGCCATCTCTTGGAGAACTTGATCTCTCGTATTGCTCAAGCCTTGAGAAATTCCCAGAGATATTAGATAAGATGGAGAATATGACATCCCTCCGGTTGGTGCATACACCCATAAAAGAATTGCCAAATTCCATTCAGAATCTTAGTCGGCTTCAAGTGCTGGACGTGTTTGAATGTGGATTTCATCATATACCATTAAACATTACCTTGTTGCCAGAACTGAGGTATATTAGTTTTTTTCGAACACCTAAACCGGATGAAGGTGAAGAAACAGTGAGTTGGATGAAGTCTTCAAACGGCACATTTTATGCATCACAGTGTACTATATCAGATGGAATAATATTACCAAAAATATTTGGTTGGTTTTCCATGTATATGGAAGAATTAGTGTTGTCCCATGTTAATTTCACATTCCTTCCTGATTGCATCATGGAATGTCTTCTTTTGAAGGAATTGAATTTGAACAAGTGTCATAAGCTTCAACAAATCAGATGGTTTCCACCCAACTTAGAAACACTCTTTGTGACATGTTGTAGATCTTTACAAGATTTAGACCTCACAATCCTTCCCGGAAGCACCAAAGAACATTACAATTTCAGGAGACTTATTGTAGATAATTGTCAGAATCTTCATATAATCAAAGGAATTCCACCAGAAGTTTTCTCTGCAACAAATTGCCGGTCCCTGCCTTCCTCATACCAAACCAAGTTATTCATTCAGGAGGAGGATAGAAACATATGGAATATCGTGCCAGGAAACAAGATTCCAGAGTGCTTCCATTGTTCTGATAATGGAAATTCAATCTCTTTTTGGTTTCGAAATAAGTTTCCTGCCATTTCACTTTGTGTTGTCCTTGGAGCACGGGATGAACACCAAACGGCATTCTATTTTTGTCCAAAATTGGAGATCAATGGCAAAACCGTAAATAAGTGGCTCCTACAGAACAAGAAGTATTGGCTTGTTCCAAAGCTAGAAGGTGATCATATATTCTTTCTCCATGACAAACAAAAGAGAAATGAAAATAGTGTGAGTGTCAATGAAGCACTTGTGGGAAATAATGGATGGGTTCGTGCCAAGATTTTTGTTGACTTCTTTTCTCTAACGGGATGGACAAAAATTGCAATGCAAATTGGAATCCGTGTATTAGAAGGAGAAGATGTCCGTTTCAGCAGTCCTTATCAAAAAGACGATAATGTGACAGTGACGGCCACAGGGGACTCATGCGGCACAAGCATAGTCGAAG 3565 0.395 MEDRRLSLALSSHSSSSDYGWDYDVFLSFRGPDTGKHFAGNLYYALTQRGIRTFYADKKLNRGEELQSTLLKRIQESKVAIPIFSKDYADSAFCLIELEAIMDTMKAKGRLVFPVFFGVSASVVRFQTGSYKKAMAKHEGRYDHHIVQKWREALHQASNLSGNSFHFKNEHEHEFELIEKITEAVSGNVNRSLLCVAKHPVGLELRMQHVCKLLDVVPGGGCNNNEVRMVGIHGIGGIGKSTLAKAVFNYIADQFDGRCFLENVRENSSRHGLEHLQEKLLYDMVGENNIRLVGTSEGVPLIKHRLHQMKVLLILDDVDQEKQLQELAGGVDWFGPGSRVIITTRDQQEDARKLFEWKLNKKADPHFDHVINRAVTYCAKLPLALEIISSDLATIDADKWESALGHYERTLGTEEIYGKLKRSFDRLEKEVQNVFLDIACCLKGLSLTEVNDLLSAHHRFCPEYHIPVLVDKSLIKIENNVVKVHDKIHEMGRKIEQEGNHGYRYHLSSSDALVQIFKHKEFQNMRVLNFDDAKCVKAIPSLSSTPNLEELSFSNCESLTEIDASVGTLGRLKILNVSGCNNLRSFPPLNFPSIEELNFRSCSNLESFPKILEKMETLTKLALDYTAIKAIPDLFSAHNLVELSFSNCVNLIEVDVSVGFLSKLRLLKASGCCKLRSFPSLLLPSLEELDLSHCSSLEKFPEILDKMDNLSKLNLDDSGIKAIPDLFSAHNLVELSFSDCVNLIEVDVSVGFLSKLRLLKVFGCCKLRSFPSLLLPSLGELDLSYCSSLEKFPEILDKMENMTSLRLVHTPIKELPNSIQNLSRLQVLDVFECGFHHIPLNITLLPELRYISFFRTPKPDEGEETVSWMKSSNGTFYASQCTISDGIILPKIFGWFSMYMEELVLSHVNFTFLPDCIMECLLLKELNLNKCHKLQQIRWFPPNLETLFVTCCRSLQDLDLTILPGSTKEHYNFRRLIVDNCQNLHIIKGIPPEVFSATNCRSLPSSYQTKLFIQEEDRNIWNIVPGNKIPECFHCSDNGNSISFWFRNKFPAISLCVVLGARDEHQTAFYFCPKLEINGKTVNKWLLQNKKYWLVPKLEGDHIFFLHDKQKRNENSVSVNEALVGNNGWVRAKIFVDFFSLTGWTKIAMQIGIRVLEGEDVRFSSPYQKDDNVTVTATGDSCGTSIVE 1188
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc274148g00001 1188 Pfam TIR domain 23 188 IPR000157 GO:0007165
Stsc274148g00001 1188 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 23 497 IPR044974 GO:0006952
Stsc274148g00001 1188 Gene3D - 18 191 IPR035897 -
Stsc274148g00001 1188 ProSiteProfiles TIR domain profile. 21 189 IPR000157 GO:0007165
Stsc274148g00001 1188 FunFam Disease resistance protein (TIR-NBS-LRR class) 19 191 - -
Stsc274148g00001 1188 Gene3D - 350 428 IPR042197 -
Stsc274148g00001 1188 Gene3D Ribonuclease Inhibitor 816 1015 IPR032675 -
Stsc274148g00001 1188 PRINTS Disease resistance protein signature 305 319 - -
Stsc274148g00001 1188 PRINTS Disease resistance protein signature 229 244 - -
Stsc274148g00001 1188 PRINTS Disease resistance protein signature 681 697 - -
Stsc274148g00001 1188 PRINTS Disease resistance protein signature 378 392 - -
Stsc274148g00001 1188 Pfam NB-ARC domain 225 347 IPR002182 GO:0043531
Stsc274148g00001 1188 SUPERFAMILY RNI-like 725 985 - -
Stsc274148g00001 1188 SUPERFAMILY L domain-like 512 771 - -
Stsc274148g00001 1188 SUPERFAMILY Toll/Interleukin receptor TIR domain 12 162 IPR035897 -
Stsc274148g00001 1188 SUPERFAMILY "Winged helix" DNA-binding domain 415 499 IPR036390 -
Stsc274148g00001 1188 Gene3D Ribonuclease Inhibitor 506 613 IPR032675 -
Stsc274148g00001 1188 Gene3D Ribonuclease Inhibitor 614 803 IPR032675 -
Stsc274148g00001 1188 SMART till_3 22 160 IPR000157 GO:0007165
Stsc274148g00001 1188 Gene3D - 192 349 IPR027417 -
Stsc274148g00001 1188 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 193 438 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc274148g00001 Stsc-Chr274148 2188 8065 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc274148g00001 226 822 WRKY Transcription Factor Family AT5G45050 28.943 3.05e-48 186
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc274148g00001 - - ahf:112751548 1521.14