Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc274128g00001 ATGGCATCTTCTTCTTCTTCTTCAGATGTTCCTGTAATCAACCATGATGTCTTCATCAGTTTCAGAGGAGAAGACATCCGCGATAATTTTCTTAGCCATTTGAGAAAAGAATTCCGTCGTAACCAAATTGATTTCTTTCTTGATGATGAAAAGCTTCATCCCGGAGACGAGATTTCTTCCACACTTGTTCGAGCAATTGAGGAATCTTCCATTTCACTGGTCATCTTCTCGAAACACTATGCTTCTTCGAGATGGTGTATGGAGGAGCTTGTGAAGATAATTGAATGCATGAAACAATATCAAAGGATTGTGATACCTGTCTTTTACAACATTGATCCTTCTGATGTCAGGCATCAGAAACGAACTTTTTCAGAGGCTTTTGATGTCCACAAAGAAAGATATGAGGAGGAAAATATGCAGAATTGGAGATCTGTTTTAAAGGAGACAGCAAATTTATCTGGAATTCATTATCCATCAAAATATAGAAATGAATCTGAACTCATCGAAGAAATTGTCAAGCATATTTCAGAGAAATTATCACATCAGATTTCAAATGCATCTGAAGGCTTTATTGGAATCGATGAAAATTTGAAACGTATTCAACCTTTATTGGCAATAGAGTCTGATGAAGTTCGATTTCTTGGAATTTGGGGTAGTAGAGTTATTGTAACTACTAGAGATGAGCAAATACTAATTGCTGCAAGAGTTCATGACATATACAAGGTCCAGGAATTGAGCTTTGAAAGTTCCCGTGAGCTTTTTTGCTTAAGAGCCTTTCACAAAAGCTATCCTGAAAATGGATATGAAGAGCTTTCAGACATGGCAATTAGGTATGCGAAAGGCATTCCATTAGCCTTAGAAGTGTTGGGATCTTTTCTATGCTCAAGGAGTGCAGTAGCTTGGGAAAGTGCACTAAGAAAACTTGAGACTCATCCTGATTCGAGCATTTTCAATGTGTTAAAGTTGAGTTACGATGGATTAGATGATTCAGAGAAGAACATATTCCTTGACATTGCATTCTTTTTCAAAGGAGAACACAAGGATAATGTCATAAGGTTTCTAGACTCTTGTGATTTCTTTGGAGCTATTGGAATAGACAACCTCCAACGTAAGGCTCTTATAACTACTTCACCAGAAGACACAATACAAATGCATGACCTGATAGAACAAATGGGTTTGGAAATTGTCTTCAAGGAATCAACTAAGGACGTCAAAAAGCGTAGTCGATTGAGGAATCCTGAGGATGTCAGGAAATTATTGGAAAATAGTAAGGGAGAAAAGTCAGTTGAAGGGATCATATGTGACTTGTCCCAAATTAGTGATCTACGCTTAAATGCGAACTCCTTTAAAAATATCCATCATCTAAGGTTTCTGAAGCTTTATGCTCCTTGGGATCAAAACCCATCATATGCTTATGTTCCCAAAACCCTGAAGCTGTTTTATGCTAAACTCAGGTATTTGGAGTGGAATAGTTATCCTCTGAATTCTCTACCATCAAGGTTTTGTACAGAGAAGCTTATTGAGCTTAGGATGCCCAACAGTCAAATTTCTAAACTCTGGGATGGAATGCAGGATCTTGCCAATTTGAGAAGCCTTGAACTTGATGGATGTAAACAGTTGGTAGAGCTTCCAGATTTCAGTAAAGCAACAAAGCTTCAAACAATAACCCTTAGCGAGTGTGAAAAGCTATGTCAACTTCATCCATCTATTTCATCCCTCCAATCACTTGAGTGTTTGGATGTTTATGGTTGCAAAGAATTGAAGTGTGTCAAATGCCATTTGAAGTCTCTTAAATCACTTAGTGCTGATAAATGTTCAAGCCTGGAGGAATTTTCAGTGTCAACAGAGGGACTGCAGTCTTTGTGTTTGCCTTTGGGTGGAATTAAGAGTCTGCAAAATGAATTCTGTTACTTTATATCTGTTAAATATATTAGTTTTTATGATTGCAGAGAGCTAACTGAGCTGCCACACAACATGAAAGCCCTATCAAGGTTAAGGACTCTTGACGTAGGGGGTTGTTGTGGTCTTCAATCTATACCAGAGCTTCCACCATCTCTTCAAGTGCTTCATGCTGATGACTGCACATCACTGGAAAGAATATTCAGTTTGAAGGCAGTATTTAGTTTGAATAGGATAAAGATGTCATTTGTAAATTGCACGAGATTGGAAGAGGAGTCAGCGAATGATATTATGGAAGATGCCCGTCTCACAATATTCAGAAATGTTTTCTTGTCGGCAGCAGCAAAACAATCTTCTCATAGATTTGATGAGAAGCATGGTAGTGTTTGTTATCCAGGGAAGACAGTTCCAGAGTGGTTCAGGTTTCGGACAGAAGAAGAAGCATCCATAACAATTGAACCAGAACAATGTAACTACCAGTGGTTGGATTTCATCTTCTGCTGTGTTGTTTCTCAAAACTTACCTCCTCATTATATTGATGGATTTGGTGATGTCAACATCAAGTGTGAACACCGCCACTTCGACGATGTTATAAGTCAAGGGGCAGTCCGTATTCGTAAAAGAAGATTGAACTCTGATCACGTTTTAATTTGGACTGATCCAATTTTTAGCTATAGCGTATTGAGTGAAATTGAAGAGTGCAGAGACAGTGATGGCAGTGATGATGTTGACAGCACTTGCAACCGAAACATCTCATTCAGATTCAGTGTTAATAGACCTGCAAGAGGGAAGAGAGTGGAAGAAAGGAAAGAATATGATGGAGATTGTTTTATCAAAGGGTGTGGAGTTTTTCCGGTGTATGCCTCAACTGTAGTGGGTGCCATTAAAAAACTTGACCCTCATCATAACTCCATCCCATCATGGGTGGATCTCGACGCATTGAAAAGCGAGATGATCCGGAAGAGTAGAGGAAAAATCAAAACTCCAAGACAATTTTGGTGGTCATGA 2907 0.3867 MASSSSSSDVPVINHDVFISFRGEDIRDNFLSHLRKEFRRNQIDFFLDDEKLHPGDEISSTLVRAIEESSISLVIFSKHYASSRWCMEELVKIIECMKQYQRIVIPVFYNIDPSDVRHQKRTFSEAFDVHKERYEEENMQNWRSVLKETANLSGIHYPSKYRNESELIEEIVKHISEKLSHQISNASEGFIGIDENLKRIQPLLAIESDEVRFLGIWGSRVIVTTRDEQILIAARVHDIYKVQELSFESSRELFCLRAFHKSYPENGYEELSDMAIRYAKGIPLALEVLGSFLCSRSAVAWESALRKLETHPDSSIFNVLKLSYDGLDDSEKNIFLDIAFFFKGEHKDNVIRFLDSCDFFGAIGIDNLQRKALITTSPEDTIQMHDLIEQMGLEIVFKESTKDVKKRSRLRNPEDVRKLLENSKGEKSVEGIICDLSQISDLRLNANSFKNIHHLRFLKLYAPWDQNPSYAYVPKTLKLFYAKLRYLEWNSYPLNSLPSRFCTEKLIELRMPNSQISKLWDGMQDLANLRSLELDGCKQLVELPDFSKATKLQTITLSECEKLCQLHPSISSLQSLECLDVYGCKELKCVKCHLKSLKSLSADKCSSLEEFSVSTEGLQSLCLPLGGIKSLQNEFCYFISVKYISFYDCRELTELPHNMKALSRLRTLDVGGCCGLQSIPELPPSLQVLHADDCTSLERIFSLKAVFSLNRIKMSFVNCTRLEEESANDIMEDARLTIFRNVFLSAAAKQSSHRFDEKHGSVCYPGKTVPEWFRFRTEEEASITIEPEQCNYQWLDFIFCCVVSQNLPPHYIDGFGDVNIKCEHRHFDDVISQGAVRIRKRRLNSDHVLIWTDPIFSYSVLSEIEECRDSDGSDDVDSTCNRNISFRFSVNRPARGKRVEERKEYDGDCFIKGCGVFPVYASTVVGAIKKLDPHHNSIPSWVDLDALKSEMIRKSRGKIKTPRQFWWS 968
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc274128g00001 968 Pfam Leucine Rich Repeat 505 522 IPR011713 -
Stsc274128g00001 968 SUPERFAMILY Toll/Interleukin receptor TIR domain 4 154 IPR035897 -
Stsc274128g00001 968 PRINTS Disease resistance protein signature 279 293 - -
Stsc274128g00001 968 PRINTS Disease resistance protein signature 524 540 - -
Stsc274128g00001 968 ProSiteProfiles TIR domain profile. 13 179 IPR000157 GO:0007165
Stsc274128g00001 968 FunFam Disease resistance protein (TIR-NBS-LRR class) 12 181 - -
Stsc274128g00001 968 Pfam NB-ARC domain 218 314 IPR002182 GO:0043531
Stsc274128g00001 968 Gene3D Ribonuclease Inhibitor 593 733 IPR032675 -
Stsc274128g00001 968 Gene3D Ribonuclease Inhibitor 397 592 IPR032675 -
Stsc274128g00001 968 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 159 338 IPR027417 -
Stsc274128g00001 968 SUPERFAMILY L domain-like 434 723 - -
Stsc274128g00001 968 Gene3D - 244 328 IPR042197 -
Stsc274128g00001 968 Pfam TIR domain 15 185 IPR000157 GO:0007165
Stsc274128g00001 968 Pfam C-JID domain 764 921 IPR045344 -
Stsc274128g00001 968 SUPERFAMILY "Winged helix" DNA-binding domain 315 420 IPR036390 -
Stsc274128g00001 968 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 218 612 IPR044974 GO:0006952
Stsc274128g00001 968 SMART till_3 14 152 IPR000157 GO:0007165
Stsc274128g00001 968 Gene3D - 13 186 IPR035897 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc274128g00001 Stsc-Chr274128 1 4359 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc274128g00001 219 739 WRKY Transcription Factor Family AT5G45050 31.959 5.97e-70 252
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc274128g00001 - - adu:110278282 880.552