Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc274117g00001 ATGATCACAATCTTCTTCTTCTTCTTCATCATCATCACTCCATCAACCTCTTCCGATACTTTAACCACAACACGAATCCTCACAACTAACCAAACCCTCTTCTCGCAAAACCAAACCTTCATTCTCGGCTTCTTCAGAGCTTCAAACACCAACTACTACCTCGGAATATGGTACAACAACATCATTCCTCAAACAATAGTTTGGGTTGCAAACAGAGACAACCCCATTGACAACTCCAAAGGCTATCTCAAGATGGGACACAACACCGGAAACTTTCTCCTCCTGAATTCTTCCGGGAACCCAGCATGGTCATCCAACCAAACCAACGCCAAGAATCCAATTCTCAAGCTTCTCGACACCGGTAACCTTGTTCTTCAAGATTCATCAGACAAGACCGATGAAAACAGTAACTACTTATGGCAGAGCTTCGATTACCCAACGGATGCTTTGTTACCTGGGATGAAGATGGGTTGGAACTTGGACACAAGAACAGACAAGTACTTGACATCATGGAAGGTAACAGGTGAAGATCCTTCAAGCGGTGACTACACTATGAAGATAGATTACCATGGTTTACCTGAGGGTTTCATCAGAAGAAACCAAACTATAATATACCGAACTGGTCCTTGGAATGGTGTCAGATTCAGTGGGGTCCCCAACATGAAAGATGACACCAATGATCTCAAGTACAATTTCACTTATGATGATCATGCTGTGTGGTTCTCTTTCTCTCTTACAAATCCTTCATTGCTGTCCAGGATTGTTCTGAATTCTGATGGCGAGTATCAACGCTACATGTGGATACAAGGAAGATGGAACAAATTCTCTTACGCACCAGCTCATGAATGTGATTACTACAGAGAGTGTGGCTCCTATGGAGTGTGTGATAGCAATGCTTCACCGGTTTGCAGTTGTATGCATGGGTTTAGCCCTGAGAACAGAGAAGCTTGGAACTTGAGAGATGGGTCTGATGGGTGTGCGAGGAACACGGGTTTGGATTGTCCCAATGACAGGTTCTTGCATCTTCAGAACATGAAGCTGCCGGAGACAACAAGAGTGTTTGTGAATAAGAGTATGAGACTTGATGAATGTGAGGGTTTGTGCAAGAGGAATTGTTCATGCACTGCATATGCAAACATCGATATCAGAGATGGTGGAAGTGGTTGTGTTATGTGGATTGGTCAACTCGTTGACATGATTGTCTTTCCTACTAATGGACAAGATCTTTATGTCAGATTGGCAGCTGCTGATATAGAATCTAGTAGCTCCAACAAGAATCATACAGTAGTTCAGGGTGTTGGCATCACACTTAGTGTGCTTGTTTTAGTTTTGGGATTGGTTGCTCTTTGTTACATAAGGAAGAAGAGACAACAAAGATCTAGAGGTTTAATGAATGAGGTAGTGTCTTCAAGTGGAAGGAACATGGATGATCTAGAGTTGCCACTGTTTGATTTTGATACCTTAACAATGGCTACAAATAATTTCTCTCAAGATAATAAACTTGGAGAAGGAGGCTTCGGCAGTGTTTATAAGGGCACATTGATTGAAGGCCAGGAAATTGCTGTGAAGAGGTTATCAGAGGATTCTGGGCAAGGAATTGAAGAGTTCAAGAATGAAGTTAAATTGATTGCCAAGCTCCAACACCGAAATCTTGTTCGGTTGCTTGGTTGCTGCATTGAGAAGGATGAGAAGATGTTGGTATATGAGTATATGGAAAATAGAAGCCTTGATTCGATTTTGTTTGATAAATCAAGAAGAGCCTTGCTTGATTGGGAAAGACGTTTCAATATTATATACGGGATAGCTAGAGGACTTCTTTATTTGCATCAAGATTCAAGATTTCGAATTATTCATCGAGATCTTAAGACAAGTAACATATTACTAGACAATGACATGAATCCAAAGATATCAGACTTTGGAATGGCTAGAATTTTTGAAAAAGATCAAACACAAGCAAAAACATTAAGAATTGTTGGAACCTATGGTTATATGTCTCCCGAATATGCTATGGATGGAAACTTCTCAATAAAATCTGATGTATTTAGCTTTGGAGTTATGGCATTGGAGATCATAACAGGAAAGAAGAATAAAGAGTTTTATAGTGATAACGATGAATTGAATCTCCTGGGAAATGTATGGAGGCATTGGCAAGAAGGAACTGCATTGACATTGATTGATCCATCCATTGGCAATTCATATACAGAATCTGAAGTTGTAAAATGCATACATATTGGCCTCTTATGTGTTCAAGAACGTGCAGAAGATAGACCAACAATATCTTCTGTGGTCTTAATGTTGAGTAGTGAAGCTCCATCAATGCCAAAACCTAAGAATCCTGGATTTTCTGTGAGGCAAAATCATCCAAACACTCGTTTATTTTCAAGTACGCAAGATGAATCATGGAGTGTGAATCAAGTTTCAACCACAATATTTGATCCTAGGTAG 2445 0.4012 MITIFFFFFIIITPSTSSDTLTTTRILTTNQTLFSQNQTFILGFFRASNTNYYLGIWYNNIIPQTIVWVANRDNPIDNSKGYLKMGHNTGNFLLLNSSGNPAWSSNQTNAKNPILKLLDTGNLVLQDSSDKTDENSNYLWQSFDYPTDALLPGMKMGWNLDTRTDKYLTSWKVTGEDPSSGDYTMKIDYHGLPEGFIRRNQTIIYRTGPWNGVRFSGVPNMKDDTNDLKYNFTYDDHAVWFSFSLTNPSLLSRIVLNSDGEYQRYMWIQGRWNKFSYAPAHECDYYRECGSYGVCDSNASPVCSCMHGFSPENREAWNLRDGSDGCARNTGLDCPNDRFLHLQNMKLPETTRVFVNKSMRLDECEGLCKRNCSCTAYANIDIRDGGSGCVMWIGQLVDMIVFPTNGQDLYVRLAAADIESSSSNKNHTVVQGVGITLSVLVLVLGLVALCYIRKKRQQRSRGLMNEVVSSSGRNMDDLELPLFDFDTLTMATNNFSQDNKLGEGGFGSVYKGTLIEGQEIAVKRLSEDSGQGIEEFKNEVKLIAKLQHRNLVRLLGCCIEKDEKMLVYEYMENRSLDSILFDKSRRALLDWERRFNIIYGIARGLLYLHQDSRFRIIHRDLKTSNILLDNDMNPKISDFGMARIFEKDQTQAKTLRIVGTYGYMSPEYAMDGNFSIKSDVFSFGVMALEIITGKKNKEFYSDNDELNLLGNVWRHWQEGTALTLIDPSIGNSYTESEVVKCIHIGLLCVQERAEDRPTISSVVLMLSSEAPSMPKPKNPGFSVRQNHPNTRLFSSTQDESWSVNQVSTTIFDPR 814
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc274117g00001 814 Pfam PAN-like domain 335 399 IPR003609 -
Stsc274117g00001 814 PANTHER BULB-TYPE LECTIN DOMAIN-CONTAINING PROTEIN 4 757 - -
Stsc274117g00001 814 CDD PAN_AP_plant 332 414 - -
Stsc274117g00001 814 ProSiteProfiles Protein kinase domain profile. 495 773 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc274117g00001 814 Pfam S-locus glycoprotein domain 205 312 IPR000858 GO:0048544
Stsc274117g00001 814 CDD B_lectin 30 146 IPR001480 -
Stsc274117g00001 814 Gene3D - 13 143 IPR036426 -
Stsc274117g00001 814 CDD STKc_IRAK 501 766 - -
Stsc274117g00001 814 MobiDBLite consensus disorder prediction 782 798 - -
Stsc274117g00001 814 SMART serkin_6 495 773 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc274117g00001 814 Pfam Protein tyrosine and serine/threonine kinase 497 763 IPR001245 GO:0004672|GO:0006468
Stsc274117g00001 814 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 459 570 - -
Stsc274117g00001 814 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 13 143 - -
Stsc274117g00001 814 SUPERFAMILY alpha-D-mannose-specific plant lectins 51 211 IPR036426 -
Stsc274117g00001 814 ProSitePatterns Protein kinases ATP-binding region signature. 501 523 IPR017441 GO:0005524
Stsc274117g00001 814 ProSiteProfiles Bulb-type lectin domain profile. 18 138 IPR001480 -
Stsc274117g00001 814 SMART ntp_6 334 413 IPR003609 -
Stsc274117g00001 814 Pfam Domain of unknown function (DUF3403) 768 814 IPR021820 GO:0004674
Stsc274117g00001 814 ProSitePatterns Serine/Threonine protein kinases active-site signature. 616 628 IPR008271 GO:0004672|GO:0006468
Stsc274117g00001 814 SUPERFAMILY Protein kinase-like (PK-like) 480 797 IPR011009 -
Stsc274117g00001 814 ProSiteProfiles PAN/Apple domain profile. 334 414 IPR003609 -
Stsc274117g00001 814 MobiDBLite consensus disorder prediction 770 798 - -
Stsc274117g00001 814 Gene3D Phosphorylase Kinase; domain 1 469 570 - -
Stsc274117g00001 814 Pfam D-mannose binding lectin 65 172 IPR001480 -
Stsc274117g00001 814 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 571 774 - -
Stsc274117g00001 814 PIRSF SRK 1 814 IPR024171 GO:0004674
Stsc274117g00001 814 Gene3D Transferase(Phosphotransferase) domain 1 571 777 - -
Stsc274117g00001 814 SMART blect_4 24 146 IPR001480 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc274117g00001 Stsc-Chr274117 1770 5663 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc274117g00001 425 814 Receptor kinase-like Gene Family AT4G05200 51.750 7.44e-133 410
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Stsc274117g00001 PK_Tyr_Ser-Thr 3.5e-50 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc274117g00001 - - aip:107621495 1250.34