Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc274049g00002 ATGGAACCTTGGAGTTATGTTCCTGATGAGAAAGGATATTTGTTTTCTGATGAAATGGATTCTTTTTCACTTGATGCTTTTGTGAGAAGTAGAAAGGCAATGACTGAATGGGACAGCAACAAAGCCTCTTGTAATAATTTCGAGAGAGGCGAATTCAATTTGGAAAGAGAGGTAGTTAGAAGCATGGAATTCGTAGACTTGGGGTTCCCGGACTTGTTCCGAAAGCCCTTTCATGGCAGCCACCCTGTGGAGACATCAACCTGTCAGATAGACAGTAATTTGAGTAGAAGAGGGAATTCCTCTGCTCAAGTTATTGAAGAAGCATCCGAGTTGAAGCATTTGAGTTCTTTAGTTGAATTGAAAGCTCACGATTCATCGTTGATCGATCTGAAGCTAGGGAGAATAGCAGATTTTCAGGGTGCAAGCAATGATAAAGTTGGAAATGAAGAGTTCACTTTAACATCAATGCAACCAAGTCCAACCACGCTTGCGAAGAGAGCTCGAACTTCATGCTTGCCAACTCAGACTCCTGTATGTCAAGTTTATGGCTGCAACATGGATCTTAGTTCCTCAAAAGATTACCACAAAAGGCATAAGGTTTGTGATGTTCACTCCAAGACAGCTAAAGTCATTGTTAATGGTATTGAACAGAGGTTTTGTCAGCAATGCAGCAGGTTCCATTTGCTAGCTGAGTTTGATGATGGTAAGCGAAGCTGTCGCAGACGCCTAGCAGGACACAATGAACGCCGAAGGAAACCTCAGTTTGATTATATGACTAGTAAACAACATAAGATACTTCATTCTTATCAAGGTGCAAGATATATGGGGTCGTCGTTACAGAAGAGACAACAATTCTCATTTCAAGACATATTTCGAGGTGGCACCCTTTTCCCGGCAAAGTATGATCAAATCTCTCAGAATGGCAATGTGAAATTGGAAGAGGAATCCGTTTTCAGCCGTCAACTAACAGCACCTGTCATGCATGGTCAGGAGTTATCTAGCCGTGCTCTCTCTCTTCTGTCAGCTCAGTCACAGATTCCGATAGCTAGCTCCCTTGGTAGTTTTCACGGCATCTCCGTGCTCAACGGAGATGAGCAAGCTTCCGAAATGCCTTCGGGGACAAGCAACGAGGGTAAATATGTAGTGGATGAGACATTTCCGTGCGAGATGAACCCAAAAGAATCTAACAAGAGGGAATCGGCAATACTTTCCGACGATATTTGCCAACCATCGGAGTTATTTAATGTCAAACAACATCATTCTCCCTCGGAACATGGATCCACTGTGGATCTGTTCCAATTATCTTCACATCTTGAAAGGGTGGAGCAGCAAAGAAATTCTGTTTTGGTAAAGTGGGAAAATGAGGACTGGTGTTTCCCCACAATGTAA 1389 0.4291 MEPWSYVPDEKGYLFSDEMDSFSLDAFVRSRKAMTEWDSNKASCNNFERGEFNLEREVVRSMEFVDLGFPDLFRKPFHGSHPVETSTCQIDSNLSRRGNSSAQVIEEASELKHLSSLVELKAHDSSLIDLKLGRIADFQGASNDKVGNEEFTLTSMQPSPTTLAKRARTSCLPTQTPVCQVYGCNMDLSSSKDYHKRHKVCDVHSKTAKVIVNGIEQRFCQQCSRFHLLAEFDDGKRSCRRRLAGHNERRRKPQFDYMTSKQHKILHSYQGARYMGSSLQKRQQFSFQDIFRGGTLFPAKYDQISQNGNVKLEEESVFSRQLTAPVMHGQELSSRALSLLSAQSQIPIASSLGSFHGISVLNGDEQASEMPSGTSNEGKYVVDETFPCEMNPKESNKRESAILSDDICQPSELFNVKQHHSPSEHGSTVDLFQLSSHLERVEQQRNSVLVKWENEDWCFPTM 462
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc274049g00002 462 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 133 380 IPR044817 GO:0003677
Stsc274049g00002 462 FunFam Squamosa promoter-binding-like protein 14 171 240 - -
Stsc274049g00002 462 Pfam SBP domain 179 252 IPR004333 GO:0003677
Stsc274049g00002 462 ProSiteProfiles Zinc finger SBP-type profile. 176 253 IPR004333 GO:0003677
Stsc274049g00002 462 Gene3D - 171 240 IPR036893 GO:0003677|GO:0005634
Stsc274049g00002 462 SUPERFAMILY SBT domain 177 258 IPR036893 GO:0003677|GO:0005634
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc274049g00002 Stsc-Chr274049 2078 5994 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc274049g00002 100 460 SBP-box Gene Family AT1G69170 38.243 3.05e-62 206
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Stsc274049g00002 SBP 1e-31 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc274049g00002 - - vum:124825483 621.698