Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc274005g00002 ATGGACCCACCACCGCCACCGCCACCGTCAGCCACCTCCTCCAACGCCGCCAACAAGCTCCGCTTCATGTGCAGTCACGGCGGTCAGTTCCTCCCCCGTCCACGCACCAACACGCTCTTCTACGCTGGCGGCGAGACACGCATAGTCTCCTTCCACCGCCACAACCTCATCACTCTCTCCTCATTCATTTCTCACATCTCCGCCACGCTCTCCGTCGCTCCTCCCTTCAACATCAAGTACCACCTCCCGCCTCACCTCCACCTCGACTCACTCATCTCACTCTCTTCCGACGACGACCTCGCCGTACTCCTCGACGAGAACCGCCGCCTCAACTCCACTCCCTACCGCATCAGATTGTTCCTCTTCTTCTCCGACTCTACTCCGCTTTCCGCCGTCGCAATCCGGCACCCGAAGAGGGAGGCGTGGTTCTTTGACGCGCTTAAGAGTGCTAAGATCATGGAGCGTGATGCTCACGTGACCACTCAGGAGTTTGCTTCGGCGGGGTTTTGTTCCTCTGCTGCTGAGTCTATGGTTTTGGATACAACCTCATCGTTTGGCTCCACTTCTTCTTCCGCTTCGTCGACGAATTTGCCTCCGTTGAGGGCTCAGCTTGATGAGAACAACAACAACGACGCCGTTTTGAAGGATAGTAAAGCGAAGCTGAACTCTTCGGATTCGATCTCGTGTGATAATACTGTTTCATCTAGTGTTATGCCCCACAAGCTAAATATATCTTATGAAGACCTGGGGGTTTATCATGTTTCGGAGGCAAGAACCAATGCTGAATCCATTGAAGCTGAAAGCAAAATCGCTTACATTCCCTCTGGGGTTGTAGCAAATAACATGAATATGGATCTAGGGTATGCCTCATTTCCACAGTTTAATCAAGTGGAGAGTCCACAGTTGCAGTTTATACAAGCTCATCAGCAAATTCTACCAATCCACCCAAGCGGCCTGTTACCCGTACCATCATGCCAACCGATGTACCAGCATCCACAGCCATTGCAGCATATGGTTTACTATCCTAATCAACCGCGTGCTATATACCTTGTGCCTATTGGAAACATCCCTCCCAATGGTTTTCCTATAACTGCTTGTGGCCAAGCTTCACTGAATCCGAATCCAGATCCTCCCTTATTGAATTGTCATGTAGCTTACAATCATAGTGGGGAAGCCAAGTCTCCTTTTGGCCATGATTTCGCCCCACCAGATTACTTAACAGACAATGTGATGTCTGCATCTTCTATTCATGTAACTCATGATGGAAATCAGCAACAAGAAATGGATATTTATTCATTATATCATCAATCTCCAAATGTATCTATCAATTCCGGGGAATCTCCCAAGTTCGGAAATGAATTTGATGATGGCCTTGCTCGCGATCAGATATACAAATCACAGCCCCCTCCTCCGAAATACCAAACCATGTCAAAAGCTACAACAAACTTGTTATCTGAGGCTCTTGCTAAATTGCATGTGGATAACCTGAAGCAGCAGACAGAACAGTAG 1509 0.4884 MDPPPPPPPSATSSNAANKLRFMCSHGGQFLPRPRTNTLFYAGGETRIVSFHRHNLITLSSFISHISATLSVAPPFNIKYHLPPHLHLDSLISLSSDDDLAVLLDENRRLNSTPYRIRLFLFFSDSTPLSAVAIRHPKREAWFFDALKSAKIMERDAHVTTQEFASAGFCSSAAESMVLDTTSSFGSTSSSASSTNLPPLRAQLDENNNNDAVLKDSKAKLNSSDSISCDNTVSSSVMPHKLNISYEDLGVYHVSEARTNAESIEAESKIAYIPSGVVANNMNMDLGYASFPQFNQVESPQLQFIQAHQQILPIHPSGLLPVPSCQPMYQHPQPLQHMVYYPNQPRAIYLVPIGNIPPNGFPITACGQASLNPNPDPPLLNCHVAYNHSGEAKSPFGHDFAPPDYLTDNVMSASSIHVTHDGNQQQEMDIYSLYHQSPNVSINSGESPKFGNEFDDGLARDQIYKSQPPPPKYQTMSKATTNLLSEALAKLHVDNLKQQTEQ 502
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc274005g00002 502 CDD PB1_UP2 23 122 - -
Stsc274005g00002 502 SMART PB1_new 34 124 IPR000270 GO:0005515
Stsc274005g00002 502 MobiDBLite consensus disorder prediction 186 208 - -
Stsc274005g00002 502 PANTHER OS05G0427100 PROTEIN-RELATED 12 367 - -
Stsc274005g00002 502 SUPERFAMILY CAD & PB1 domains 37 130 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc274005g00002 Stsc-Chr274005 4080 6525 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc274005g00002 10 136 MAP Kinase Kinase Kinase AT2G35050 34.375 1.25e-14 75.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc274005g00002 - - aip:107644557 785.793