Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc273996g00001 ATGTTGCCGTACTTGAGAAAGATTAAGTTTCTGCTGCTACAACTTTTGTTCTTCACTTGCCTTGTTAACTCATACGTACCTCTCGATGATCTTGCTGTCAACTGCGGCTATTCCGGAAACATAACCTTTCATGATCGCAACTGGGTTGGAGACGTTCATCACCCCAACTTATTCTCTACAATTGAATCATCATCATCACAGCCATCACTCATAACCGCTCATACAATTCCTACCTATTCTTCAGTTGATTCGGTTCCGTTTGGAACCGCACGCATTTTTCACTCTCAATTCACATACTCTTTCCCTCTCAAAACTCCCGGCCCAAAGTTCCTTCGTCTTCACTTCTATCCAACAACGTATCTCAACTTCACTCCCTACGACTCTCTCTTCTCTGTGACAGCTGGCACCTTCACACTTCTCAAAGATTTCAACGCTTCCCATTGGGTTCTCCAGGGAGGCGACGACGACACTGTCTCCAAAGAATACTGCATCAACGTTGAAGCAGGTGATAACGAGAGACTCACTCTCAACATAACCTTCATTCCCAGCACTCATGCCTATGCTTTCATCAACGGCATCGAGGTGGTGTCCATGCCTTCCTTCCTCTATTACACAGATCTTTCAAACGACACTGGCTTTGAGCTCGTTGGTCAAGGTACTGTCTCCTACCAACTTCAAAGTGACAAAGCTCTCGAGACACTTTACAGAGTCAACGTCGGCGGCAGTCAGGTTCCAACCGCCAAGGATACCGGCATGTTCCGCTACTGGGACGACGATTTTACTCGCTACTTGGAGCAGCAGCATCCACATAGCATTCAGAATGGCTTTGCAGTTCACCTGAACTACAGAAACAACACCGTTCCAAATTACACCGCACCTGAAGTTGTGTACTTAACCGCCCGAAGCTACGGTATGAATGAGACTGCGAATTACAATGTAACTTGGAACTTCCAGGTGGATTCGCAGTTTTATTACATGGTGAGGTTACATTTTTGCGAGTGGGACAAGAATATCCAGCACCCTGGAGACAGAGTCTTCGAGATCTTTATAGCTGACACCATGGCTGAAGAACTCGCAGACGTGATTGTATGGAGTGGCGGATATCGAATTCCTACTCATAAGGACTACGCTGTGTTTATGAATGCCAATGGAAACTTGTCCAAGAAAGTCAACCTTTCTGTTAAGCTCCAACGGAGGCGGTTGCGCCAAGGAACCAGGATCAGTGATGTCATATTGAACGGCATCGAGATATTCAAGATAAGTGATGAAAGTAATAATCTCGCCGGACCTAATCCCGATCCAGTTCCATCCCCACCACAACTACTTCAACCGAATACACAACCGTCCAAAAAGAAACACACCACTGTTATCATCGTTGCAGCAGTTATAGTTTTATGCTTCGTTCTGATTATTGTTGGTGGCCTCGTACTTTTCCGGCTAAAGGGAAGAACGGTTCTTGGAAAGAAAGTACAAAGAAAAAAATCGACATCAGAACCGTCATTGTCACTGCCATCACACCTCTGCCGCTACTTTACAATCGCGGAGATCAGAGCTGCCACAAACAACTTCGACGATGTGTTCATCATCGGAGTTGGAGGATTCGGCAACGTTTACAAGGGCTACATCGACGACGGTGTAACCCCCGTCGCCATCAAGCGCCTCAAACCGGGTTCGCAACAAGGCATCAACGAGTTCCTCAACGAGATTGAGATGCTTTCCCAGCTCCGGCACCTTCATTTGGTGTCCCTGATTGGCTACTGCAACGACGGCGTAGAGATGATCCTCGTCTACGACTTCATGCAACGTGGCACTCTCCGCGAGTATCTCTACGGTTCTGATAATCCACCTCTTACGTGGAAGCAGAGGCTCCAGATCCTATTGGGCGCAGCAAGAGGGCTGCATTATCTCCATGCGGGTGCGAAGCACAATATCATCCACCGTGACGTCAAGAGCACAAATATCTTACTGGACGACAAATGGGTGGCCAAGGTTTCCGATTTTGGCTTATCTAAAGTAGGACCCACGGGGACTTCTCAAACCCACGTCAGCACCGTGGTTAAGGGCAGCCTTGGATATTTAGACCCTGAGTACTACAAGCGTCAACGCTTGACTCTCAAATCTGACGTGTACTCCTTCGGTGTGGTCCTTCTTGAGGTATTGTGTGCGAGGCCGCCTTTGATGCGTAACGTGGACAAGCACAAGGCCAGCTTGGTTGACTGGGTAAGAAAAATGAGTGATGAGGGAAAGCTCGATCAGACGGTCGAGATTTTCTTGAAAGGGTCGATCACGCGAGAGTGTTTGAAGTGGTACGGTCAATTGGCGTTGAGTTGTTTGCGTGATGATGGGAATGAACGGCCATCGATGAGTGATGTGGTGGGGGCACTCGAGTTTGCAATGCAGTTGGCGGAAGGCGAGGGTGGGGCCCAATATAAGGAAAAGAAAGAGGGTGAGGATAGAGCGTTGTTGATACCGCCGTTTACAAGTGATGAAGGGAGTGAGGTGCTTTTCACTAGTGACGAATCTGGGACCAGGGATAGTAGGGTAACCACTGCTTCTGGTAGCAGTGAGGAACGTGCTATGCATTCTGCGGTGGTGTTCTCTGAGATTGATTTATCTCTTCAGTCATCAGTCATCGCAAGCTGGATGGGAGAGCTGGGGAATAAGGATAGTGGCGTCCTTCGCTCAACACGGGATGGATCAAGGAACGGAAGCAATGGCAAGGCAGGCTGCGGGGAGTTCTTAGAAGATGATGGGAGATGGATTGGCGGGTTCTCTTAG 2778 0.4831 MLPYLRKIKFLLLQLLFFTCLVNSYVPLDDLAVNCGYSGNITFHDRNWVGDVHHPNLFSTIESSSSQPSLITAHTIPTYSSVDSVPFGTARIFHSQFTYSFPLKTPGPKFLRLHFYPTTYLNFTPYDSLFSVTAGTFTLLKDFNASHWVLQGGDDDTVSKEYCINVEAGDNERLTLNITFIPSTHAYAFINGIEVVSMPSFLYYTDLSNDTGFELVGQGTVSYQLQSDKALETLYRVNVGGSQVPTAKDTGMFRYWDDDFTRYLEQQHPHSIQNGFAVHLNYRNNTVPNYTAPEVVYLTARSYGMNETANYNVTWNFQVDSQFYYMVRLHFCEWDKNIQHPGDRVFEIFIADTMAEELADVIVWSGGYRIPTHKDYAVFMNANGNLSKKVNLSVKLQRRRLRQGTRISDVILNGIEIFKISDESNNLAGPNPDPVPSPPQLLQPNTQPSKKKHTTVIIVAAVIVLCFVLIIVGGLVLFRLKGRTVLGKKVQRKKSTSEPSLSLPSHLCRYFTIAEIRAATNNFDDVFIIGVGGFGNVYKGYIDDGVTPVAIKRLKPGSQQGINEFLNEIEMLSQLRHLHLVSLIGYCNDGVEMILVYDFMQRGTLREYLYGSDNPPLTWKQRLQILLGAARGLHYLHAGAKHNIIHRDVKSTNILLDDKWVAKVSDFGLSKVGPTGTSQTHVSTVVKGSLGYLDPEYYKRQRLTLKSDVYSFGVVLLEVLCARPPLMRNVDKHKASLVDWVRKMSDEGKLDQTVEIFLKGSITRECLKWYGQLALSCLRDDGNERPSMSDVVGALEFAMQLAEGEGGAQYKEKKEGEDRALLIPPFTSDEGSEVLFTSDESGTRDSRVTTASGSSEERAMHSAVVFSEIDLSLQSSVIASWMGELGNKDSGVLRSTRDGSRNGSNGKAGCGEFLEDDGRWIGGFS 925
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc273996g00001 925 CDD STKc_IRAK 529 796 - -
Stsc273996g00001 925 Pfam Protein tyrosine and serine/threonine kinase 529 794 IPR001245 GO:0004672|GO:0006468
Stsc273996g00001 925 ProSitePatterns Protein kinases ATP-binding region signature. 529 552 IPR017441 GO:0005524
Stsc273996g00001 925 Gene3D Phosphorylase Kinase; domain 1 483 599 - -
Stsc273996g00001 925 SUPERFAMILY Protein kinase-like (PK-like) 496 798 IPR011009 -
Stsc273996g00001 925 FunFam Receptor-like protein kinase FERONIA 600 818 - -
Stsc273996g00001 925 FunFam Receptor-like protein kinase FERONIA 495 599 - -
Stsc273996g00001 925 FunFam FERONIA receptor-like kinase 30 199 - -
Stsc273996g00001 925 Pfam Malectin-like domain 33 420 IPR024788 -
Stsc273996g00001 925 Gene3D Transferase(Phosphotransferase) domain 1 600 816 - -
Stsc273996g00001 925 Gene3D - 31 199 - -
Stsc273996g00001 925 Gene3D - 229 421 - -
Stsc273996g00001 925 MobiDBLite consensus disorder prediction 889 909 - -
Stsc273996g00001 925 ProSiteProfiles Protein kinase domain profile. 523 798 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc273996g00001 925 MobiDBLite consensus disorder prediction 836 855 - -
Stsc273996g00001 925 ProSitePatterns Serine/Threonine protein kinases active-site signature. 644 656 IPR008271 GO:0004672|GO:0006468
Stsc273996g00001 925 SMART serkin_6 523 798 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc273996g00001 925 FunFam FERONIA receptor-like kinase 229 421 - -
Stsc273996g00001 925 PANTHER OS03G0124300 PROTEIN-RELATED 10 484 IPR046957 GO:0004672
Stsc273996g00001 925 MobiDBLite consensus disorder prediction 428 448 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc273996g00001 Stsc-Chr273996 2320 7653 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc273996g00001 25 803 Receptor kinase-like Gene Family AT3G51550 46.642 0.0 660
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_CrRLK1L-1 Stsc273996g00001 Malectin_like 1.9e-37 CL0202
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc273996g00001 - - mtr:25497555 882.478