LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Stsc273993g00001	TGTGGCGCGTTTGGGACTTGTACTGAGAATTCTATGCCTTTCTGCAACTGTTTGACTGGCTATGAGCAAAGTAATTCATCTGATTGGAACCTTGAGGATTACTCAAGTGGATGCAAGAGAAGAGCAAAGTTCCAATGCGAGACTGCGAATCCAAATGGTGGTTCGAAGGACAGGTTTATGGAGTTTCCCAACATGGCATTGCCTAATAACTCTCAAGCTTTGAATGCAGGGGATGCAGAGGAATGTGCTTCTTCTTGCTTGAGCCAATGTTCTTGCACGGCTTATGCTTTTAACAATAAAGGTTGTTCAATCTGGAAGGGTGATCTTTTGAATCTTCAGCAGCTTACTCAAGGTGACAGCAATGCAGAATCCTTGTTTTTAAGGCTTGCAGCGTCTGAATTTCCTGATAGTAAGAGCAACAAGGGAACGATAATCGGCGCAGTTGCCGGCGGCGTTGGCGCCATAGTTGTTGTCCTAGTTGCTCTTGTCTTCTTCTTGGTGAGGAGAAGGAGACGAGTTCAAACCAGGACAACAATGGAGGGTTCTTTGGTGGCTTTTGCATACAAAGATTTGCAAAACGCCACAAAGAACTTTTCTGAGAAACTCGGAGGAGGAGGCTTTGGTTCTGTTTTCAAAGGAACACTGCCTGATTCGAGTGTCATAGCTGTGAAGAAGCTTGAGAGCATTAGCCAAGGCGAGAAGCAGTTCCGGACGGAAGTAAGTACAATTGGGACAGTCCAGCATGTTAATCTTGTTAGGCTCCGCGGCTTCTGCTCCGAAGGCACACAAAAGCTTCTTGTATATGATTTCATGCCGAATGGTTCTTTAGATTCAAGCTTGTTTCATGAGGGGGGTTCCAAGGTGTTGGATTGGAAGATAAGGTACCAAATTGCTCTTGGGACTGCAAGAGGACTAACTTATCTCCATGAGAAGTGCAGAGATTGCATCATTCACTGTGATGTGAAGCCAGAAAATATTCTCTTAGATTCCGAGTTTTGTCCGAAAGTGGCGGATTTCGGCCTGGCTAAGCTTGTTGGAAGGGAATTCAGCAGGGTCCTTACAACAATGAGAGGAACAAGGGGATACCTTGCACCGGAGTGGATTTCCGGGGTGGCTATAACAGCAAAAGCAGATGTATACAGCTATGGAATGATGCTGTTTGAGTTGGTTTCTGGTAGGAGGAACTCTGAGTCGTCGGAAGATGGACGAGTAGTCCGATTCTTCCCTACAACGGCGGCCTACACGGTGAACCAAGGTGGCAATGTTTTTGAGCTATTGGACCCAAAGTTGGAGGGAAATGCTGAGATTGATGAGGTGGTTAGAGTCATCAAAGTTGCTTCTTGGTGTGTACAAGATGATGAGGCTCATAGGCCTTCCATGGGTCAAGTTGTTCAGATTCTTGAAGGGCTTTTGGAGGTTACTTTTCCTCCAGTTCCGAGATCACTACAAGCATTTGTTGAGAACCAAGAACACATAGTTTTCTTCACTGATTCAAGCTCTACACAGAGTTCAGAAGCCAAAAGCAATCTCTCCACAACTTCTTCTCAAGCCAAAAGCAAAGTTTCTTCTTCTACAAGCCAGCAACAGCAAGATTAG	1596	0.4536	CGAFGTCTENSMPFCNCLTGYEQSNSSDWNLEDYSSGCKRRAKFQCETANPNGGSKDRFMEFPNMALPNNSQALNAGDAEECASSCLSQCSCTAYAFNNKGCSIWKGDLLNLQQLTQGDSNAESLFLRLAASEFPDSKSNKGTIIGAVAGGVGAIVVVLVALVFFLVRRRRRVQTRTTMEGSLVAFAYKDLQNATKNFSEKLGGGGFGSVFKGTLPDSSVIAVKKLESISQGEKQFRTEVSTIGTVQHVNLVRLRGFCSEGTQKLLVYDFMPNGSLDSSLFHEGGSKVLDWKIRYQIALGTARGLTYLHEKCRDCIIHCDVKPENILLDSEFCPKVADFGLAKLVGREFSRVLTTMRGTRGYLAPEWISGVAITAKADVYSYGMMLFELVSGRRNSESSEDGRVVRFFPTTAAYTVNQGGNVFELLDPKLEGNAEIDEVVRVIKVASWCVQDDEAHRPSMGQVVQILEGLLEVTFPPVPRSLQAFVENQEHIVFFTDSSSTQSSEAKSNLSTTSSQAKSKVSSSTSQQQQD	531

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Stsc273993g00001	531	Gene3D	Phosphorylase Kinase; domain 1	162	270	-	-
	Stsc273993g00001	531	SMART	ntp_6	54	129	IPR003609	-
	Stsc273993g00001	531	Pfam	Protein kinase domain	199	465	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Stsc273993g00001	531	ProSiteProfiles	PAN/Apple domain profile.	46	130	IPR003609	-
	Stsc273993g00001	531	FunFam	Serine/threonine-protein kinase	271	475	-	-
	Stsc273993g00001	531	SMART	serkin_6	196	466	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Stsc273993g00001	531	Pfam	PAN-like domain	54	111	IPR003609	-
	Stsc273993g00001	531	SUPERFAMILY	Protein kinase-like (PK-like)	172	468	IPR011009	-
	Stsc273993g00001	531	Gene3D	Transferase(Phosphotransferase) domain 1	271	475	-	-
	Stsc273993g00001	531	ProSitePatterns	Protein kinases ATP-binding region signature.	202	225	IPR017441	GO:0005524
	Stsc273993g00001	531	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	316	328	IPR008271	GO:0004672\|GO:0006468
	Stsc273993g00001	531	CDD	PAN_AP_plant	52	130	-	-
	Stsc273993g00001	531	MobiDBLite	consensus disorder prediction	497	531	-	-
	Stsc273993g00001	531	SUPERFAMILY	Hairpin loop containing domain-like	55	116	-	-
	Stsc273993g00001	531	CDD	STKc_IRAK	202	470	-	-
	Stsc273993g00001	531	FunFam	Serine/threonine-protein kinase	163	270	-	-
	Stsc273993g00001	531	ProSiteProfiles	Protein kinase domain profile.	196	471	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Stsc273993g00001	531	PANTHER	OS07G0415500 PROTEIN	1	479	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Stsc273993g00001	Stsc-Chr273993	1	1914	Dispersed/Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Stsc273993g00001	138	473	Receptor kinase-like Gene Family	AT1G56120	45.349	6.60e-80	266

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_SD-2b	Stsc273993g00001		Pkinase	2.8e-47	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Stsc273993g00001	-		-	ahf:112789715	829.32