Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc273979g00001 AATTTATCAGGAAGTGGATTGACGGGAACTATAGATGTTTCCTTTTCAAACCTCACCATGTTGGAAAAGTTGGATTTATCAAACAACAAGTTGAATGGCCGCATTCCGGATTTTCTCTCTCAATTACCTAAGTTACAGATCTTGAACTTGGCGGGCAATAACCTGAGTGGTTCACTACCATCAATCCTAGTTCAGAAATCTAACAAAGGTTTCTTGTTACTCAATGTTGATCAAAATCCATATATATGTGAATCTGGTGGAGAATGCAAAGTAGAAAAAAAGAAGAAAAAGAAGACAAAGCCATTTTTAGTAGCCGCAGCTATTGGGATTTCAGCGGTGGCTGTACTGGCTGCGGTTGCAGCCGCAGCTCTAGTCTGGACCCTGAAAAGGAGGAAAAGCAAAGGTGATAAAAAGACTCCAAGGGAGATCAAGCAAGACGATGATGTATCACTCAAGTTCAAGAATAAAGTCTATTCATACTCTGACATCCTTAAATTCACCAACAACTTGGGAAAAATCCTTGGTAAAGGTGGCTTTGGAACAGTTTTTATGGGATATATTCATGACACTCCAGTTGCTGTGAAGATGCTTTCTCCCTCAGTTCAAGGTTATCAGCAATTCCAAGCAGAGGTTAAGCTTCTAATGAGAGTTCATCATAGAAATTTGACCTCCCTTGTTGGATATTGTAATGAAGGAACCAATAAGGCTCTCATATACGAGTATATGGCCAATGGAAATCTACATCAACATCTCTCAGCACAAACCAAAGTCCTGAGCTGGAAAGACAGGCTCTGTATAGCAGTAGATGCAGCCCAAGGGTTGGAGTATTTACACAATGGTTGCAAGCCACCTATAATCCACAGAGACGTAAAACCTTCAAACATTTTGTTGACTGAAAACTTGCATGCAAAATTATCTGATTTTGGTTTGTCAAAGATTATCCCAACCGATGGGGGCAGTCATGTTTCAACTGTTGTAGCCGGCACCGCCGGCTATTTGGATCCCAATTACTACCAAACAAGCAGATTGACGGAGAAGAGTGATGTGTACAGTTTTGGAGTTGTTCTTTTGGAGTTAATAACAAGTCAAGCACCAATAATAATGTCAGAAGATGATGAGAAAGCTCACTTAAGTCATTGGGTTGATTCGATGGTTGGGAGAGGGGATATCCATGGCATTGTTGACTCAAGATTAGGGGGAGACTTTGACTGTAGCTCTGCCTGGAAAGTTGTGGAAACAGCAATGGCTTGTGTGTCTCAAAGCTCTAATGAAAGGCCAATCATGAGTGAGGTTTTGATTGAACTGAAGAACGCTTTAGCAATGGAATTAAGTCGGAAAACATATGGTGGTGGTATTGGTGTCAACAAAAATAATGGAGATTCATCTCTTGAACTGGTCTCTGTGAAGGTAGAAAATGAATCCATTCCTCAGGCCAGGTAA 1440 0.4083 NLSGSGLTGTIDVSFSNLTMLEKLDLSNNKLNGRIPDFLSQLPKLQILNLAGNNLSGSLPSILVQKSNKGFLLLNVDQNPYICESGGECKVEKKKKKKTKPFLVAAAIGISAVAVLAAVAAAALVWTLKRRKSKGDKKTPREIKQDDDVSLKFKNKVYSYSDILKFTNNLGKILGKGGFGTVFMGYIHDTPVAVKMLSPSVQGYQQFQAEVKLLMRVHHRNLTSLVGYCNEGTNKALIYEYMANGNLHQHLSAQTKVLSWKDRLCIAVDAAQGLEYLHNGCKPPIIHRDVKPSNILLTENLHAKLSDFGLSKIIPTDGGSHVSTVVAGTAGYLDPNYYQTSRLTEKSDVYSFGVVLLELITSQAPIIMSEDDEKAHLSHWVDSMVGRGDIHGIVDSRLGGDFDCSSAWKVVETAMACVSQSSNERPIMSEVLIELKNALAMELSRKTYGGGIGVNKNNGDSSLELVSVKVENESIPQAR 479
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc273979g00001 479 Gene3D Transferase(Phosphotransferase) domain 1 242 448 - -
Stsc273979g00001 479 Gene3D Ribonuclease Inhibitor 1 72 IPR032675 -
Stsc273979g00001 479 FunFam LRR receptor-like serine/threonine-protein kinase IOS1 242 448 - -
Stsc273979g00001 479 SUPERFAMILY L domain-like 1 65 - -
Stsc273979g00001 479 ProSitePatterns Serine/Threonine protein kinases active-site signature. 285 297 IPR008271 GO:0004672|GO:0006468
Stsc273979g00001 479 PRINTS Leucine-rich repeat signature 42 55 - -
Stsc273979g00001 479 PRINTS Leucine-rich repeat signature 21 34 - -
Stsc273979g00001 479 Pfam Protein tyrosine and serine/threonine kinase 170 431 IPR001245 GO:0004672|GO:0006468
Stsc273979g00001 479 SMART serkin_6 168 409 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc273979g00001 479 ProSitePatterns Protein kinases ATP-binding region signature. 174 195 IPR017441 GO:0005524
Stsc273979g00001 479 Gene3D Phosphorylase Kinase; domain 1 150 241 - -
Stsc273979g00001 479 Pfam Leucine rich repeat 1 55 IPR001611 GO:0005515
Stsc273979g00001 479 SUPERFAMILY Protein kinase-like (PK-like) 153 434 IPR011009 -
Stsc273979g00001 479 ProSiteProfiles Leucine-rich repeat profile. 20 42 IPR001611 GO:0005515
Stsc273979g00001 479 CDD STKc_IRAK 174 437 - -
Stsc273979g00001 479 ProSiteProfiles Protein kinase domain profile. 168 439 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc273979g00001 479 PANTHER OS07G0107800 PROTEIN-RELATED 1 439 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc273979g00001 Stsc-Chr273979 71 2420 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc273979g00001 1 479 Receptor kinase-like Gene Family AT2G19210 50.830 6.72e-153 455
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-I-1 Stsc273979g00001 PK_Tyr_Ser-Thr 3e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc273979g00001 - - adu:107492765 668.692