Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc273966g00001 ATGAACACTTTGAGTCAGATATTCCAAAACATATTCTCAGACAACAGCAACATAATGCTTGCTGCTATAATATCTTTGCTTCTTGTCATCCTCTTTGTCCTTCTCCTCCATCTCTATGCTAAATGGTTCCTGGCTCAGGCTCAGGCCAATGCTCGCCGCCGTCGCCGTCGCCGCCGCAGCAGACCAGCCACTGTGACTGTCTCTGATGTTCTTGGCCCTGCAAGGTTCCACCACTTCCACAGCTTCAACATAGAAGATTCACCAATTTTCCCATCATCATCATCGAGTTCTCATCATAATACATCAAAAGGGTTAGATTCTTCTATCATTGCAGGGATTCCACTTTTCATCTATACTACTAATTCAGAAGCACTGAAAGATAGTAGTAGTAGTAGTAGTGAAGAAGTTGTTGATGATGTTGAGAATAATGAGAAGGTTGTAGAACATGATGATGAGCTTGAGTGTGTGATTTGTTTGAGTTCTTTTATAGATGGAGAGATGGGAAGGTGTTTGCCAAAATGTGGACATGGTTTTCATGTGGAATGCATTGATATGTGGCTGAGTTCTCATTCAAATTGCCCAATTTGCAGGGCTCCAATAATTCTTAGCAGTGGGATTGTTGAGAATAATGATAATTCCCAATTAGGTTCTGTTATTGATGATGGTATTGATCATGTTGATGATGGTGGTGCCTCTTCTGCTTTTGTTGAGATTGTGGTTGATGATTTTGGTCAAAGTTCTGAGATTAGAGAGAATGATGAAAATGGAGGAAGGGTGAGTAGTAGCAGTAGTAGTAGTAGTGATTCTTCTGTCTCAGAAACAGAAACCTCAACATCTTTGGTAATTGTTGGATGTTCTTTGAAGAGAATGTTGAGCAAAGTTTTCCCATCTTCTAATGTAAAT 903 0.402 MNTLSQIFQNIFSDNSNIMLAAIISLLLVILFVLLLHLYAKWFLAQAQANARRRRRRRRSRPATVTVSDVLGPARFHHFHSFNIEDSPIFPSSSSSSHHNTSKGLDSSIIAGIPLFIYTTNSEALKDSSSSSSEEVVDDVENNEKVVEHDDELECVICLSSFIDGEMGRCLPKCGHGFHVECIDMWLSSHSNCPICRAPIILSSGIVENNDNSQLGSVIDDGIDHVDDGGASSAFVEIVVDDFGQSSEIRENDENGGRVSSSSSSSSDSSVSETETSTSLVIVGCSLKRMLSKVFPSSNVN 301
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc273966g00001 301 SMART ring_2 155 196 IPR001841 -
Stsc273966g00001 301 SUPERFAMILY RING/U-box 148 206 - -
Stsc273966g00001 301 PANTHER RING-H2 FINGER PROTEIN ATL51-RELATED 12 200 IPR044675 -
Stsc273966g00001 301 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 95 201 IPR013083 -
Stsc273966g00001 301 Pfam Ring finger domain 154 197 IPR001841 -
Stsc273966g00001 301 MobiDBLite consensus disorder prediction 247 278 - -
Stsc273966g00001 301 ProSiteProfiles Zinc finger RING-type profile. 155 197 IPR001841 -
Stsc273966g00001 301 CDD RING-H2_EL5-like 154 197 - -
Stsc273966g00001 301 MobiDBLite consensus disorder prediction 256 278 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc273966g00001 Stsc-Chr273966 4897 5799 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc273966g00001 10 206 Rapid Response to Elicitors AT3G16720 31.980 3.25e-26 103
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc273966g00001 - - adu:107473099 381.333