Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc273951g00001 ATGGCTGCTACTCCTTCATTAGGAACCAACAATAATGTTGCTGTTGACGGTGAATCCAATAACAATCATCAACATCATCCTGTTCTTAAACAAGAAGAAGAAGATGGAATGCTTTATGCAATGGACTTGGGAGTTTCGGTGGTGTTTCCATTTGCTGTTAAGACTGCATTTGAGCTTGGAATCTTTGACATAATAGCCAAAGATTTGTGGGGTCCAGCCAGCTGTGCAAACAAATCACTGTTTGCACAATCCCAACAAGATTGTGGTGAACATGCAAAGCTCTCAGCTCAAGACATTGCTTCACAGATTGGCAGCAAGAACCCTAATGCACCATCAATGGTGGATCGTCTTCTTAGGCTTCTTGCAAGTCATTCTTTGTTGTCTTCTTCATCACTTCCTCCTCAAGATGATAATCGCCACCAAACCGATCTACAAG 436 0.422 MAATPSLGTNNNVAVDGESNNNHQHHPVLKQEEEDGMLYAMDLGVSVVFPFAVKTAFELGIFDIIAKDLWGPASCANKSLFAQSQQDCGEHAKLSAQDIASQIGSKNPNAPSMVDRLLRLLASHSLLSSSSLPPQDDNRHQTDLQ 145
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc273951g00001 145 Gene3D - 18 143 IPR036388 -
Stsc273951g00001 145 Pfam Dimerisation domain 92 122 IPR012967 GO:0046983
Stsc273951g00001 145 SUPERFAMILY "Winged helix" DNA-binding domain 31 138 IPR036390 -
Stsc273951g00001 145 MobiDBLite consensus disorder prediction 1 22 - -
Stsc273951g00001 145 FunFam Caffeic acid 3-O-methyltransferase 19 142 - -
Stsc273951g00001 145 MobiDBLite consensus disorder prediction 1 24 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc273951g00001 Stsc-Chr273951 1359 2535 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc273951g00001 33 130 Monolignol Biosynthesis Gene Families AT5G54160 34.694 2.80e-12 60.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc273951g00001 K13066 - adu:107473077 128.642