Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc273940g00001 ATGGCATCCGCCTCTTCTTCCACTTCAATTATTCCACCACAACCACCAAGATCACCATACACCTATCACGTGTTTTTGTGTTTCAGAGGACCAGACACTGGCAATGGATTCACCAGCCATCTCCATGCCGCCCTCCGTAGGAAGGGGATCATAACCTACAAAGATGACAAAAACCTTCGCGTAGGCGATGTTATTTCAGATGAACTTGTGAAAGCAATTGAAGAGTCTATGTTTGCAGTCATTGTTTTCTCACCAGACTTCGCTTCCTCCAGTTGGTGTTTGGATGAGGTGTGCAAGATCATTGACTGCAAGAACAAGCTGCTGCTACAGATGGTGGAGGTGTTCTACCATGTGGAGCCATGTGAGGTGAGGCACCAAATTGGAACCTTTCATGAAGCTTTTCTGAAACACAAACGGGAAGGGAGACATGAGAGTGAGAAGGTTCAAAGATGGAGAGATGCGTTGAAACAAGTTACTAAGCATTCTGGCTGGACCTCCAAAAATCAGCCGGACGAGGCAGCACTTGTGGAAAACATTGCTCAACATATATTTGAATTATTAATTCCGAAGTTGCCATCTTCAATGAAGAATCTTGCGGGAATTGAATCAAGAATGAAACAAGTGATTAGTCAAATAGGCCTTGGATTCAATGATGTTCGCTATATAGCCATATGGGGATTGGGTGGCATTGGCAAGACTACTATTGCCAGAGCTGTCTTTGAAACCATTCGAAGTAGATTTGAAGTTTCTTGCTTTGTTGCTGATGTAAGGCAGCATTTTGAGAAACAAGGTATTTCTGGCGTACAAAAGCAACTTCTCAAACAAATGAAGATAATAAGCTCGGATGCTGATTATATTGACAAGTATGATGGGAGCATAACAATTCAAACCTCTTTCCATGGAAAAAAGGTACTTATTGTTCTTGATGATGTAAGTCACGAAGATCAATTAGAGAGTTTCACCGAGAAAGATTGGTTTGGTCCTGGAAGCAGAATAATAATTACAACTAGAAACAAAGAGGTGCTAAAGCAACAAGAGAGACATGAAACTTATAATGTTACAGGGTTAGTGGAAAGTGAAGCCTTTAACCTGTTTTGTTCGAAAGCTTTTAAACAGCCAGAACCTTTAGAAGGGTTTTGGGATTTGTCTAAAGAAGTTGTGGATTATTGTTCTGGTCTTCCCTTGGCACTTAAAGTATTAGGTTCCTATCTTAAAGATAGACCTATTGCGATTTGGCATAGTGCTATTCAAAAAATAAAGTCGTCTTCACATTCTGATATCATTGATGTATTGAAAATAAGCTATGATGGGTTAGATTCTATGGAAAAGAATATTTTTCTAGATATTGCTTGTTTCTTCAAAGGATATGAGAAAGAAGAAGTAATAAAGATATTAGAAGGATGTGGTCGTAATGCTGAAATTGGTATTGATATTTTGACAAATAGATCATTGATCACATTAGAGGTAGATGAGATTGATTTATATAAGAGGGCTTATCTGGGGATGCATGATCTGCTTGAAGAAATGGGCAAACAAATTGTTGTTCAGGAATCTCCCAATGATGCTAGTAAGCATAGTAGATTGTGGTGTTACAAGGATATTGACTCTATACTGAATCAAAAGAAGAGAATTGGAGCAACTCAGAGCATCGTTCTATATGATAAGACCGGCTGGGACATTACATCGGAATGGAGAGCTTTTTCTTTTTCAAATATATGGCAGCTAAAGCTTTTCATTCTTGATGGCGTGAAAACTCGCGGTCATTGCAACATTCCTTGTACATTAAAGTCTCTAAATAAGCTAGAGCACTTGAATCTGTTCAACTCCAAAAAGTTGAAGCAAATACCAGATCTTTCTGGGGTTCCCAATCTAAAAACACTTAATCTTGAAAGATGTCGTGAGCTGAATTATATTCACTCATCTCTGGTACACCACAAGAGCCTAGTTGAATTGAATTTAAGGGAATGTAATCGTCTTGAAACACTTGGAGATAAATTGGAGATGAGTTCACTCAAGAAACTAAATCTATTCAATTGCACTGGTTTGAGAAGACTGCCAGAATTTGGGGAATGCATGAAACAACTATCCACTCTTAATTTGTTTGGCTTGTTTGACAAGAGATCTGACGCACGCGACTGTTCTGGCTTTCTATTATCACATGGATGTTTAGCTGGCCTAAAGAAGTTGGAGTTAACTGGGTGTAGGCCTAGGGAGCTTAGTCGTATTCTATTCAGAACTCATGGTTTAGTGTCCCTTAGTGTTATTGGTTGGTTTGAAAGCGAAGGTATAGCTACATTTTTTGATTCTCTATCACATTTGACCTCTTTGACCAGTCTGAAATTAAATGCATGCTTTCACACATCTGAAGAGGCAGAAGAGCCGACCCCTTACTACGATCTTTCCCGCTTAGCATTGTTGACGGATTTGGAATTAGTAGAGAACTATTATTTAAGGGTTCCAATAAATATCCATCAACTTCCCAGACTTACACGTTTAGAACTAACTGATTGCTCTAAATTGGAAGTTTTGCCGGAGCTTCCATCAAGTCTAAGAGAACTACACGCACAATATTGTGATTCACTGGATGCATCTAATGTGAATGATGCTATATCAAAGGCATGTTGTGTCTTTGCAGAATCAGCTCCCCGAGATCATGAAGATATTTTGCAAATGTGTATCAGTGGGAAGGAAATTCCAGCATGGTTTGAGAATCAGGAAGAAGATAATGGAGTATCGGTCTCATTCCCGCGTAATTGCCCTTCAACTGACACCGTCGCACTTGCTCTCTGTTTCCAATTTGAAGGTGACGACACCCGAGATATCTTAGATGTATTGGTGATCTGCAACGGTAACGAATTCATCAACCAGGGTTCATTGAATATGAAGTACGCAGGTAATGGGGATCTGGGCATTATCTGCATGAACAGTTACTATTTGAGTAAACTGTTATGCCAACACAATCGCTTCCAATTGATAACTCCCTATAACCATGAGGTAGTAGAGAGATGTGGAGCACGTTGGGTGTGCAAGCAAGACATTCAAGGTTTCAAGAAGAAAAGATCCAAAAGGAAAAGAAGAACAACTTTCTAA 3090 0.3945 MASASSSTSIIPPQPPRSPYTYHVFLCFRGPDTGNGFTSHLHAALRRKGIITYKDDKNLRVGDVISDELVKAIEESMFAVIVFSPDFASSSWCLDEVCKIIDCKNKLLLQMVEVFYHVEPCEVRHQIGTFHEAFLKHKREGRHESEKVQRWRDALKQVTKHSGWTSKNQPDEAALVENIAQHIFELLIPKLPSSMKNLAGIESRMKQVISQIGLGFNDVRYIAIWGLGGIGKTTIARAVFETIRSRFEVSCFVADVRQHFEKQGISGVQKQLLKQMKIISSDADYIDKYDGSITIQTSFHGKKVLIVLDDVSHEDQLESFTEKDWFGPGSRIIITTRNKEVLKQQERHETYNVTGLVESEAFNLFCSKAFKQPEPLEGFWDLSKEVVDYCSGLPLALKVLGSYLKDRPIAIWHSAIQKIKSSSHSDIIDVLKISYDGLDSMEKNIFLDIACFFKGYEKEEVIKILEGCGRNAEIGIDILTNRSLITLEVDEIDLYKRAYLGMHDLLEEMGKQIVVQESPNDASKHSRLWCYKDIDSILNQKKRIGATQSIVLYDKTGWDITSEWRAFSFSNIWQLKLFILDGVKTRGHCNIPCTLKSLNKLEHLNLFNSKKLKQIPDLSGVPNLKTLNLERCRELNYIHSSLVHHKSLVELNLRECNRLETLGDKLEMSSLKKLNLFNCTGLRRLPEFGECMKQLSTLNLFGLFDKRSDARDCSGFLLSHGCLAGLKKLELTGCRPRELSRILFRTHGLVSLSVIGWFESEGIATFFDSLSHLTSLTSLKLNACFHTSEEAEEPTPYYDLSRLALLTDLELVENYYLRVPINIHQLPRLTRLELTDCSKLEVLPELPSSLRELHAQYCDSLDASNVNDAISKACCVFAESAPRDHEDILQMCISGKEIPAWFENQEEDNGVSVSFPRNCPSTDTVALALCFQFEGDDTRDILDVLVICNGNEFINQGSLNMKYAGNGDLGIICMNSYYLSKLLCQHNRFQLITPYNHEVVERCGARWVCKQDIQGFKKKRSKRKRRTTF 1029
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc273940g00001 1029 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 22 860 IPR044974 GO:0006952
Stsc273940g00001 1029 Pfam C-JID domain 894 1013 IPR045344 -
Stsc273940g00001 1029 SUPERFAMILY L domain-like 502 858 - -
Stsc273940g00001 1029 ProSiteProfiles TIR domain profile. 20 187 IPR000157 GO:0007165
Stsc273940g00001 1029 FunFam Disease resistance protein (TIR-NBS-LRR class) 18 188 - -
Stsc273940g00001 1029 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 186 449 IPR027417 -
Stsc273940g00001 1029 Pfam NB-ARC domain 217 434 IPR002182 GO:0043531
Stsc273940g00001 1029 Gene3D Ribonuclease Inhibitor 714 870 IPR032675 -
Stsc273940g00001 1029 Pfam TIR domain 22 193 IPR000157 GO:0007165
Stsc273940g00001 1029 SUPERFAMILY Toll/Interleukin receptor TIR domain 12 164 IPR035897 -
Stsc273940g00001 1029 Gene3D - 19 187 IPR035897 -
Stsc273940g00001 1029 Gene3D Ribonuclease Inhibitor 558 707 IPR032675 -
Stsc273940g00001 1029 SMART till_3 21 161 IPR000157 GO:0007165
Stsc273940g00001 1029 Gene3D - 356 439 IPR042197 -
Stsc273940g00001 1029 Gene3D - 188 353 IPR027417 -
Stsc273940g00001 1029 PRINTS Disease resistance protein signature 298 312 - -
Stsc273940g00001 1029 PRINTS Disease resistance protein signature 221 236 - -
Stsc273940g00001 1029 PRINTS Disease resistance protein signature 390 404 - -
Stsc273940g00001 1029 PRINTS Disease resistance protein signature 619 635 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc273940g00001 Stsc-Chr273940 1773 8063 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc273940g00001 200 854 WRKY Transcription Factor Family AT5G45050 28.592 3.35e-62 229
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc273940g00001 - - ahf:112797493 1080.86