Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc273848g00002 ATGAACTACCTATTACTTCTTCTACTTGCTTTCTTAGTTTGTGCAACCATTCATGTCTTAATAATCTTCATCTTAGGCACCAAAAAATCCAAATCCTCTAAGGATCCACCAAGGCCTTACCCTTTTCCAATCATAGGAAACATCCTAGAACTTGGTTCCCAACCTCACAAATCACTTGCTAAGCTTTCTCAAACTTATGGACCCATAATGAGCCTAAATCTTGGAAGCATAAAAACCATAGTTATATCCTCACCAAAATTAGCCAAAGAAATTCTCCATAAACATGATCAAATCCTCTCTAATAGAACAGTCCCAGATACAATTAGAGCACTTGATCACCACATATTTTCAATGGTATGGATGCCACCTACAAATCAATGGAGGATTCTTCGGAGAGTTAGTGCTAACAAAGTGTTCTCGCCTCAACAACTTGATTCTACACAAGTTTTTCGTCAGAGAAAGATGCGGGAATTGCTAGATTTTGTGAAGGAAAAAAATGAAAAAGCCGAATCATTAGATATTGGGGAAGCTACTTTTGTAGCCGTGCTTAATTCTCTGTCGAACACGTTTTTCTCCATGGATTTAGATGATCATCACAATAATTCTAAGAAGTCACAAGAGTTCAAGGAGATATTTTTGGGTATTATGAAAGAAGCTGGAAGGCCTAATGTTGTGGACTTTTTTCCAATGCTTCGCAAGCTTGATCCACAAGGTGCACGTGCAAGGATGAACAATTATTTTGGGAAGTTGATTGATTTTTTTGATGGTCTTGTTGAAGAAAGGTTAGAAAGGGAAACGAAATTATCTAATGATGTGTTGGATTCTTTGGTGGAAGTCATGATGGAAGACAACTCACAAGTTACACGCCCTCATCTATTGCATTTATTTTTGGATTTATTTGTAGCTGGAACAGACACAACATCAAGTACAATAGAATGGGCAATGTCAGAATTGTTACGCAACCCACAAAAATTAGAACAAGTTAGAAAAGAGCTTCAACAAGTTATTGGCAAAGATGAACAACAACAACAAATTGAAGAATCATACATCACAAAACTTCCTTACCTAAGAGCAGTGGTGAAAGAAACTCTTAGGCTGCACCCACCAATCCCACTTTTAGTGCCACATAAATCAGAAGACAACGTTGAAATATGTGGTTTCATGGTACCTAAAGATGCACAAATTCTTGTTAATGTTTGGGCTATGGGAAGAGATTCAAATGTTTGGAGAAACCCAAATGAATTTTTACCTGAAAGATTCTTAGAAAATGATGTTGATTTTAAGGGTCAAGATTTTGAGTTAATTCCATTTGGTGCTGGAAGAAGAATTTGCCCTGGATTACCATTGGCTTCTAGAACCATCCACATTGTTTTAGCATCTCTTCTATGTAACTATGATTGGAAGCTTGCTAATGGAAAAAAGAAAGAGGACGTTGACATGTCTGAGACATATGGGATTACTCTACACAAGACTCATCCTCTCCATGTTATACCAATCCAAGCATAA 1506 0.3705 MNYLLLLLLAFLVCATIHVLIIFILGTKKSKSSKDPPRPYPFPIIGNILELGSQPHKSLAKLSQTYGPIMSLNLGSIKTIVISSPKLAKEILHKHDQILSNRTVPDTIRALDHHIFSMVWMPPTNQWRILRRVSANKVFSPQQLDSTQVFRQRKMRELLDFVKEKNEKAESLDIGEATFVAVLNSLSNTFFSMDLDDHHNNSKKSQEFKEIFLGIMKEAGRPNVVDFFPMLRKLDPQGARARMNNYFGKLIDFFDGLVEERLERETKLSNDVLDSLVEVMMEDNSQVTRPHLLHLFLDLFVAGTDTTSSTIEWAMSELLRNPQKLEQVRKELQQVIGKDEQQQQIEESYITKLPYLRAVVKETLRLHPPIPLLVPHKSEDNVEICGFMVPKDAQILVNVWAMGRDSNVWRNPNEFLPERFLENDVDFKGQDFELIPFGAGRRICPGLPLASRTIHIVLASLLCNYDWKLANGKKKEDVDMSETYGITLHKTHPLHVIPIQA 501
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc273848g00002 501 Gene3D Cytochrome P450 22 498 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc273848g00002 501 SUPERFAMILY Cytochrome P450 36 498 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc273848g00002 501 FunFam Cytochrome P450 76C4 27 497 - -
Stsc273848g00002 501 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 437 446 IPR017972 GO:0005506|GO:0016705
Stsc273848g00002 501 CDD CYP76-like 63 498 - -
Stsc273848g00002 501 PANTHER CYTOCHROME P450, FAMILY 76, SUBFAMILY C, POLYPEPTIDE 5-RELATED 12 500 - -
Stsc273848g00002 501 Pfam Cytochrome P450 36 490 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc273848g00002 501 Coils Coil 152 172 - -
Stsc273848g00002 501 PRINTS E-class P450 group I signature 444 467 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc273848g00002 501 PRINTS E-class P450 group I signature 357 375 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc273848g00002 501 PRINTS E-class P450 group I signature 63 82 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc273848g00002 501 PRINTS E-class P450 group I signature 311 337 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc273848g00002 501 PRINTS E-class P450 group I signature 87 108 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc273848g00002 501 PRINTS E-class P450 group I signature 434 444 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc273848g00002 501 PRINTS E-class P450 group I signature 291 308 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc273848g00002 501 PRINTS E-class P450 group I signature 398 422 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc273848g00002 501 PRINTS P450 superfamily signature 302 319 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc273848g00002 501 PRINTS P450 superfamily signature 435 444 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc273848g00002 501 PRINTS P450 superfamily signature 358 369 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc273848g00002 501 PRINTS P450 superfamily signature 444 455 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc273848g00002 Stsc-Chr273848 4219 6541 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc273848g00002 12 500 Cytochrome P450 AT2G45570 49.102 2.55e-175 501
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc273848g00002 - - gmx:100809483 730.324