Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc273840g00001 ATGAACAACTACTGCTACGAAAACAACAACCACATGGTCATGGAACAACAGATTAACAGCAGCATCCTATGCAAATACACAGTCCACCGCACTGTCACTAACAAGTTCACCAAACACAACAACAAGAAATCCGCTACAGAACCCAGAACCGTTCGTGTATCATACACCGATCCAGACGCCACTGACTCCTCCGGCGATGAAGCAGAACAACAACACTACCTCTCTTCTTCTCGCAAGAGAGTAAAGCGTTACATCAACAGCATTCAAATCGAACCTGCTGCCGCAAAGAACGCTGTCTCCGCCGCACACAACAAGAAAAAGGCGGAGAACGCCGCCGCTTCTTGCCGACGGCCGGCGAAGGCTCCGGTGACCACCACCACCAACGGAGGGAGAAAGTTCCGCGGTGTCAGGCAAAGACCGTGGGGAAAATGGGCGGCCGAGATTAGAGATCCGGCGAGAAGAGTTCGCCTCTGGCTGGGAACCTACGACACGGCGGAAGAAGCTGCCATGGTTTACGACAATGCCGCCATTCAGATTCGCGGCCCTGACGCTCTCACAAACTTCATCACTCCGCCGCAACGGGGAGAGCCACAACCGCAACCGCAACCACAGCCACAGCAGCAAGAAGAAGAAGAAGCGGAAACAAAAACCGCGGTGAAACCAGAAATGAAGGTGGTTGTGAGTGCAGAAGCTTCCGGGTCCGGGTACGAGTCCGGGTCGGAGGATCACCGGTGCCTGAACCTCTCATCCCCAACCTCAGTTCTTCAATTCAGAAGCAGCGAAACAGAATCGTCAGAGCAGCCAATGAAACAATCGTTCCTCCATTCAGAACAAAGCAGTGATGACGTGTCAGTTTCAGTTTCAATGGAGGAAGTGTTCGGCGAGTGCCAAGGCGAAACGAGCTTGTTCGAGGAGACTGGTTTCTTGGGCTTTGAAAAGATGCCGGTTTGGGATGACGTGTTCGATTTCCAAACGCCGCAGTACCCGGTGATGTTCGATGAGGAAGAGGCAAAACAGTTATTTGGGGAAACGACGACGGCGACGACGTCGTTTTGGGATGATCAGGAATTAAGCATGGACAGTTACAACAGTAGCATTGTGCTGGCTGATTCACTCATCGATTTCGACAAGGCTTGCGCTCCAACAACACCTCCATCATCTAACTTGTGCCAGATGGACGATGATTACTTCCAAGATATTTTATTGGCTTCTGATCCTCTTGTCCTTCTATAG 1233 0.515 MNNYCYENNNHMVMEQQINSSILCKYTVHRTVTNKFTKHNNKKSATEPRTVRVSYTDPDATDSSGDEAEQQHYLSSSRKRVKRYINSIQIEPAAAKNAVSAAHNKKKAENAAASCRRPAKAPVTTTTNGGRKFRGVRQRPWGKWAAEIRDPARRVRLWLGTYDTAEEAAMVYDNAAIQIRGPDALTNFITPPQRGEPQPQPQPQPQQQEEEEAETKTAVKPEMKVVVSAEASGSGYESGSEDHRCLNLSSPTSVLQFRSSETESSEQPMKQSFLHSEQSSDDVSVSVSMEEVFGECQGETSLFEETGFLGFEKMPVWDDVFDFQTPQYPVMFDEEEAKQLFGETTTATTSFWDDQELSMDSYNSSIVLADSLIDFDKACAPTTPPSSNLCQMDDDYFQDILLASDPLVLL 410
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc273840g00001 410 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 47 293 - -
Stsc273840g00001 410 PRINTS Ethylene responsive element binding protein signature 133 144 IPR001471 GO:0003700|GO:0006355
Stsc273840g00001 410 PRINTS Ethylene responsive element binding protein signature 155 171 IPR001471 GO:0003700|GO:0006355
Stsc273840g00001 410 MobiDBLite consensus disorder prediction 47 71 - -
Stsc273840g00001 410 ProSiteProfiles AP2/ERF domain profile. 132 189 IPR001471 GO:0003700|GO:0006355
Stsc273840g00001 410 Gene3D AP2/ERF domain 131 190 IPR036955 GO:0003700|GO:0006355
Stsc273840g00001 410 FunFam Ethylene-responsive transcription factor 2 131 190 - -
Stsc273840g00001 410 SUPERFAMILY DNA-binding domain 132 188 IPR016177 GO:0003677
Stsc273840g00001 410 MobiDBLite consensus disorder prediction 109 134 - -
Stsc273840g00001 410 MobiDBLite consensus disorder prediction 38 76 - -
Stsc273840g00001 410 MobiDBLite consensus disorder prediction 185 224 - -
Stsc273840g00001 410 Pfam AP2 domain 132 181 IPR001471 GO:0003700|GO:0006355
Stsc273840g00001 410 CDD AP2 132 188 IPR001471 GO:0003700|GO:0006355
Stsc273840g00001 410 SMART rav1_2 132 195 IPR001471 GO:0003700|GO:0006355
Stsc273840g00001 410 MobiDBLite consensus disorder prediction 256 278 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc273840g00001 Stsc-Chr273840 1966 3741 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc273840g00001 24 278 AP2-EREBP Transcription Factor Family AT4G27950 44.906 1.82e-59 195
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Stsc273840g00001 AP2 2.1e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc273840g00001 - - adu:107460630 602.438