Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc273805g00001 ATGGGGAGGAAGTGTTCACATTGTGGGAACATAGGACACAATTCAAGAACTTGCACAACAACATCACCTATGATGATGATGATGAATGGAGGAACATCAACAATTAATAATAGTTTTGTAGGGCTTAAGCTCTTTGGGGTTCAACTTGATGTATCTTCTTCTTCTTCATCTTGTTATGTTGCAATGAAGAAAAGCTTTAGCATGGATTCATTGCCCTCTTCATCTTCTACAACAACTACTAATTCCTCCTTTTCGTCTTCAAGATTAACCATTGATGATAACATCAACATAATCGAAAACAAAGCTCATCATCTTGTTGCTACTGGCTACCTTTCAGATGGTCTCATAGTTCCAGCACAAGAGAGGAAAAAAGGAGTTCCATGGACAGAAGAAGAACACAGAACATTCCTTGTTGGGCTTGAGAAGCTGGGAAAAGGTGATTGGAGAGGAATATCAAGAAACTATGTGACTACAAGAACTCCAACCCAAGTTGCAAGCCATGCTCAGAAGTATTTTCTTAGATTGGCATCTATGAATAAGAAGAAGAGACGCTCAAGTCTCTTTGACTTGGTTAGCATAGGCAACAAGAACACAAAAACAACATTTCATCATCATCATCAAGTTGGTGGCATATCTAATTGCAAATCATCAGGAGATTCATGTGTTCTTAGTCATCATGAGTCAAAATGTGAAGAAGTTGTTGAGAACAAAGACATTGATGATGCCACCTTATCACTTCTAGGGCGCCTTACCCCATTTAAGCAAGAAATCAAATCACATAATAATGACCAAAAAACCATTAACAATGATAATTATAATCATCATCATTCTCATCTTCATCACCATCAACATCAAGGTCAACCATTTTGGCTTCATCATCAACAACAACAACACTTGAATGCTGCTGCTTCTTCTTCTTCTTCTTCTTCTTCAGCAGTGCCTGATTTGGAGCTCACTCTTGCAGCCCCAAAGGAACAAAATAAATCAACATCCCCCAGTTCCTTATTTTTTGGTCCAATTAGTGTTACTTAA 1032 0.3798 MGRKCSHCGNIGHNSRTCTTTSPMMMMMNGGTSTINNSFVGLKLFGVQLDVSSSSSSCYVAMKKSFSMDSLPSSSSTTTTNSSFSSSRLTIDDNINIIENKAHHLVATGYLSDGLIVPAQERKKGVPWTEEEHRTFLVGLEKLGKGDWRGISRNYVTTRTPTQVASHAQKYFLRLASMNKKKRRSSLFDLVSIGNKNTKTTFHHHHQVGGISNCKSSGDSCVLSHHESKCEEVVENKDIDDATLSLLGRLTPFKQEIKSHNNDQKTINNDNYNHHHSHLHHHQHQGQPFWLHHQQQQHLNAAASSSSSSSSAVPDLELTLAAPKEQNKSTSPSSLFFGPISVT 343
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc273805g00001 343 SMART sant 124 174 IPR001005 -
Stsc273805g00001 343 MobiDBLite consensus disorder prediction 255 343 - -
Stsc273805g00001 343 SUPERFAMILY Homeodomain-like 121 177 IPR009057 -
Stsc273805g00001 343 ProSiteProfiles SANT domain profile. 128 176 IPR017884 -
Stsc273805g00001 343 PANTHER TRANSCRIPTION FACTOR KUA1 3 295 - -
Stsc273805g00001 343 ProSiteProfiles Myb-like domain profile. 120 172 IPR001005 -
Stsc273805g00001 343 MobiDBLite consensus disorder prediction 256 274 - -
Stsc273805g00001 343 CDD SANT 127 172 IPR001005 -
Stsc273805g00001 343 MobiDBLite consensus disorder prediction 323 343 - -
Stsc273805g00001 343 FunFam transcription factor MYB1R1 126 177 - -
Stsc273805g00001 343 NCBIfam myb-like DNA-binding domain, SHAQKYF class 123 174 IPR006447 GO:0003677
Stsc273805g00001 343 ProSiteProfiles Zinc finger CCHC-type profile. 3 18 IPR001878 GO:0003676|GO:0008270
Stsc273805g00001 343 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 120 176 IPR017930 -
Stsc273805g00001 343 Gene3D - 126 178 - -
Stsc273805g00001 343 Pfam Myb-like DNA-binding domain 127 172 IPR001005 -
Stsc273805g00001 343 MobiDBLite consensus disorder prediction 288 315 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc273805g00001 Stsc-Chr273805 5335 7685 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Stsc273805g00001 Myb_DNA-binding 2.7e-11 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc273805g00001 - - adu:107490116 437.187