Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc273795g00002 ATGGTTCTCATCAGCGGAGTTAGTGTCAGTGTCTCAGTTCAAGCTAAATCTTGGCTTAACGCTCATGCAACATTCTATGGGGCCAATCAAAGTCCCTCTAGCCTTGGGGGAGCTTGCGGTTATGACAACACCATTCATGCTGGGTTTGGTGTCAACACAGCAGCAGTGAGCACCATGCTCTTCAGAGGTGGTGAGGTTTGTGGAGCATGCTACCAACTCATATGTGACTACCGGGTCGACCCGAAATGGTGCCTCCCCGGCCGAAGTGTGACCGTAACCGCCACCAATTTTTGTCCTCCGAACAACCAAGGCGGATGGTGTGATCCACCTCACCATCACTTTGATTTGTCCCTTCCTTCCTTCTTTCGCATTGCAAGACAAGGCAACGAAGGCATTGTTCCCGTTCTCTATACAAGGGTTCCATGCAAAAGAAGAGGTGGAGTGAGATTCACGTTGAGGGGGCAATCAAATTTCAACATGGTGATGATATCGAATGTTGGAGGCAGCGGGGACGTGAAGGCCGTCTGGATCAAAGGGTCCAGAGGCCGCGCATCCTGGCTGCCTATGCACCGCAACTGGGGAGCCAACTGGCAAAGCAGTGCGGATCTCCGGAACCAGAGGCTCTCCTTTAAGCTAACATTAGCTGATGGGAAAACATTGATGTTCCTCAATGTTGTTCCTTCTAGTTGGAGGTTTGGACAGACATTTTCATCAAGAAACCAGTTCTCTTGA 732 0.5041 MVLISGVSVSVSVQAKSWLNAHATFYGANQSPSSLGGACGYDNTIHAGFGVNTAAVSTMLFRGGEVCGACYQLICDYRVDPKWCLPGRSVTVTATNFCPPNNQGGWCDPPHHHFDLSLPSFFRIARQGNEGIVPVLYTRVPCKRRGGVRFTLRGQSNFNMVMISNVGGSGDVKAVWIKGSRGRASWLPMHRNWGANWQSSADLRNQRLSFKLTLADGKTLMFLNVVPSSWRFGQTFSSRNQFS 243
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc273795g00002 243 SUPERFAMILY Barwin-like endoglucanases 12 165 IPR036908 -
Stsc273795g00002 243 Gene3D - 147 243 IPR036749 -
Stsc273795g00002 243 Gene3D - 3 143 IPR036908 -
Stsc273795g00002 243 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 157 238 IPR007117 -
Stsc273795g00002 243 SUPERFAMILY PHL pollen allergen 144 238 IPR036749 -
Stsc273795g00002 243 PRINTS Expansin signature 48 62 IPR002963 GO:0009664
Stsc273795g00002 243 PRINTS Expansin signature 146 158 IPR002963 GO:0009664
Stsc273795g00002 243 PRINTS Expansin signature 224 240 IPR002963 GO:0009664
Stsc273795g00002 243 PRINTS Expansin signature 90 100 IPR002963 GO:0009664
Stsc273795g00002 243 PRINTS Expansin signature 158 179 IPR002963 GO:0009664
Stsc273795g00002 243 PRINTS Expansin signature 104 121 IPR002963 GO:0009664
Stsc273795g00002 243 PRINTS Expansin signature 77 88 IPR002963 GO:0009664
Stsc273795g00002 243 PRINTS Expansin signature 195 216 IPR002963 GO:0009664
Stsc273795g00002 243 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 36 147 IPR007112 -
Stsc273795g00002 243 Pfam Lytic transglycolase 53 137 IPR009009 -
Stsc273795g00002 243 PRINTS Expansin/Lol pI family signature 130 146 IPR007118 GO:0005576
Stsc273795g00002 243 PRINTS Expansin/Lol pI family signature 224 238 IPR007118 GO:0005576
Stsc273795g00002 243 PRINTS Expansin/Lol pI family signature 57 75 IPR007118 GO:0005576
Stsc273795g00002 243 PRINTS Expansin/Lol pI family signature 35 53 IPR007118 GO:0005576
Stsc273795g00002 243 PRINTS Expansin/Lol pI family signature 186 200 IPR007118 GO:0005576
Stsc273795g00002 243 PRINTS Expansin/Lol pI family signature 17 32 IPR007118 GO:0005576
Stsc273795g00002 243 PANTHER EXPANSIN-A15 10 241 IPR002963 GO:0009664
Stsc273795g00002 243 SMART dpbb_1 53 137 IPR007112 -
Stsc273795g00002 243 CDD DPBB_EXPA_N 18 142 - -
Stsc273795g00002 243 Pfam Expansin C-terminal domain 148 227 IPR007117 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc273795g00002 Stsc-Chr273795 4895 9857 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc273795g00002 2 241 Expansin Gene Family AT3G15370 61.111 1.02e-115 330
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc273795g00002 - - ahf:112735861 468.003