Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc273786g00001 ATGCGGGTTTACCCTAACCGCAAGCCAACCCGCTCCGCTGCGGGTAGGGTTGACAACCCGATCCGAACGGGTTGGATACGCGCGGATATGGTGCCTCATGAGCTTGTAACCCTCGCCGTCGGGTATGATCGCTGGCGGAGCCTTGCTTTAGCCTCTCCAATCTCAGTTTCCCTTCATTGTGAAGCCAAACCCAACAACAATTCAACTGTTGTAGAAATTCATCAAGATGAGGCCATCAATAATACTACTACAAATGTTGTGGAAGCTTCAAGAAAGACTAGTTATAATGGAGAAGAGAAGAGCAATCCTATATGTTTGACATGGAAGGATCTTTGGGTGAGTGCTTCCATGGGGAGGAAGAGAGGGATCAAATACATCCTTCAGGGACTAACCGGTTATGCCAAACCGGGTCAGCTATTGGCCATCATGGGTCCTTCTGGATGTGGCAAGTCAACACTTCTTGATGCTCTAGCAGGTAGATTGGGTTCAAACACAATTCAAACTGGTGATATTCTTGTCAATGGTCACAAACAATCACTGGCTTATGGAACCACGGCATATGTTACACAAGATGATACGTTGATGACATCGTTGACGGTGAGAGAAGCAGTGTACTACTCAGCCCAGCTTCAATTACCTGACTCCATGTCCAAGGCAGAGAAGAAAGAGAGAGCAGAGCTCACAATAAGAGAGATGGGTTTGCAAGATGCTATCAACACCAGAATTGGTGGCTGGGGTTGCAAAGGGATCAGTGGTGGTCAGAAGAGGCGTGTCAGCATCTGCATTGAGATCCTAACACGCCCAACACTCTTGTTTCTTGATGAACCAACAAGCGGACTTGACAGTGCTGCCTCCTATTATGTCATGAAAAGAATCAAGTCCCAGCTGGATCATCAAGATGGCATTCAAAGGACTGTTGTTGCATCAATTCATCAGCCAAGTGCTGAAGTTTTCCAATTCTTTGATAATCTCTGTTTGCTATCTGCTGGCACAACTGTTTACTTTGGACACGCTTCTTCTGCAATTCAG 1029 0.4645 MRVYPNRKPTRSAAGRVDNPIRTGWIRADMVPHELVTLAVGYDRWRSLALASPISVSLHCEAKPNNNSTVVEIHQDEAINNTTTNVVEASRKTSYNGEEKSNPICLTWKDLWVSASMGRKRGIKYILQGLTGYAKPGQLLAIMGPSGCGKSTLLDALAGRLGSNTIQTGDILVNGHKQSLAYGTTAYVTQDDTLMTSLTVREAVYYSAQLQLPDSMSKAEKKERAELTIREMGLQDAINTRIGGWGCKGISGGQKRRVSICIEILTRPTLLFLDEPTSGLDSAASYYVMKRIKSQLDHQDGIQRTVVASIHQPSAEVFQFFDNLCLLSAGTTVYFGHASSAIQ 343
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc273786g00001 343 Pfam ABC transporter 128 278 IPR003439 GO:0005524
Stsc273786g00001 343 ProSitePatterns ABC transporters family signature. 250 264 IPR017871 GO:0005524|GO:0016887
Stsc273786g00001 343 PANTHER ABC TRANSPORTER G FAMILY MEMBER 11 91 343 - -
Stsc273786g00001 343 CDD ABCG_EPDR 103 336 - -
Stsc273786g00001 343 Gene3D - 106 343 IPR027417 -
Stsc273786g00001 343 SMART AAA_5 136 331 IPR003593 GO:0016887
Stsc273786g00001 343 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 106 343 IPR003439 GO:0005524
Stsc273786g00001 343 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 109 341 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc273786g00001 Stsc-Chr273786 8258 10658 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc273786g00001 126 314 Calmodulin-binding Proteins AT2G36910 28.934 8.22e-10 58.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc273786g00001 K05681 - gmx:100794527 389.037