Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc273740g00002 ATGGCTAAGGTCATTGTGTCGCAAGAATGCACAGATTGTCACAATAAGCAAAGAGGCCACTGTCAACTTGACAGCAATAGCAAATTTTATTGTGCCGACGTTCGGCCGCCGGAAAACACAAGCACAAGTACACAAGTTCTGAGTAAGAAGGCTAAACTGGGTTTAGGTTTGGGTATTGGCTTCTTAGGCATCTTGACAATTGGGTTGCTCTTGCTCTTCTTCCTAATCTACAAGAGAAAACGTGGCTCCTCAAGCAGCCACTTTGAATCAAGATACTCTTATTCTGAGTCCTCTTCCAATCCACACCTAGATAATGGCATTGCTTACCTTGGAGTTCCACTCTTCTCCTACAAGGATCTTAGAGAAGCAACAAACAATTTTGACCATACCAAAGAACTTGGAGATGGAGGCTTTGGCACTGTCTACTATGGGAAACTCCAAGATGGAAGAGAAGTTGCCGTGAAGCGCTTGTATGAGCACAACTACAGGAGAGTAGAGCAATTCATAAATGAAGTTCAGATCCTAACACGTTTGAGGCATAAAAATCTTGTGTCCCTCTATGGCTGCACTTCGCGCCACAGCCGCGAACTGCTACTTGTATATGAATTTATTTCTAATGGCACGGTTGCTTGTCATATCCATGGTGAATCAGCCAAGCGCAGCTTACTACCTTGGGCTACAAGAATCAAAATCGCCATAGAGACTGCTACTGCATTGGCTTATCTTCATGCTTCTGACATCATTCACCGAGATGTGAAGACCAACAACATTCTTCTTGACCACAACTTTACTGTCAAGGTTGCAGATTTTGGTCTTTCAAGACTATTCCCCATTGATGCCACCCACGTGTCCACCGCCCCACAAGGGACCCCTGGCTATGTTGACCCTGAATACCACCAGAATTACCAGCTTACTAGCAAGAGTGATGTGTATAGTTTTGGAGTTGTTCTCATTGAGTTAATATCATCCATGCCTGCAGTTGATATGAACAGGGATAAGGATGAGATTAACTTATCGAATCTAGCCATAAAGAAGATTCAAAGTAGTGCAATTAGTGACTTGGTTGATGGTTCTCTTGGTTTTGATTCAGACAAGGAGGTAAGGAGAATGATAGTTTCGGTGGCGGAATTGGCTTTCCAGTGTTTGCAAAGAGACAAGGAGTTGAGACCTTCCATGGATGAAGTGTTGGATGAACTGAAGAAGATTGAGGCTGATGGTATTGAAGTTTCTCAAAACAAGATTGTACATCCAGCACCACCAGCTTCACCTGAATGGGATGAAGTTGGATTATTGAAGAATATGAAGATACCACTACCTTCTTCACCAATCACTGTCACTGATAATTGGGAAAGTAAATGCACAACGCCCAACATCAGTGCTTAG 1383 0.4317 MAKVIVSQECTDCHNKQRGHCQLDSNSKFYCADVRPPENTSTSTQVLSKKAKLGLGLGIGFLGILTIGLLLLFFLIYKRKRGSSSSHFESRYSYSESSSNPHLDNGIAYLGVPLFSYKDLREATNNFDHTKELGDGGFGTVYYGKLQDGREVAVKRLYEHNYRRVEQFINEVQILTRLRHKNLVSLYGCTSRHSRELLLVYEFISNGTVACHIHGESAKRSLLPWATRIKIAIETATALAYLHASDIIHRDVKTNNILLDHNFTVKVADFGLSRLFPIDATHVSTAPQGTPGYVDPEYHQNYQLTSKSDVYSFGVVLIELISSMPAVDMNRDKDEINLSNLAIKKIQSSAISDLVDGSLGFDSDKEVRRMIVSVAELAFQCLQRDKELRPSMDEVLDELKKIEADGIEVSQNKIVHPAPPASPEWDEVGLLKNMKIPLPSSPITVTDNWESKCTTPNISA 460
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc273740g00002 460 FunFam WAK1-OsWAK receptor-like cytoplasmic kinase (OsWAK-RLCK) 99 203 - -
Stsc273740g00002 460 ProSitePatterns Protein kinases ATP-binding region signature. 133 155 IPR017441 GO:0005524
Stsc273740g00002 460 Gene3D Phosphorylase Kinase; domain 1 100 203 - -
Stsc273740g00002 460 FunFam Wall-associated receptor kinase-like 20 204 412 - -
Stsc273740g00002 460 PANTHER LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-LIKE 1.4 8 454 IPR044652 GO:0004672
Stsc273740g00002 460 SUPERFAMILY Protein kinase-like (PK-like) 112 419 IPR011009 -
Stsc273740g00002 460 SMART serkin_6 127 400 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc273740g00002 460 Pfam Protein kinase domain 129 397 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc273740g00002 460 ProSiteProfiles Protein kinase domain profile. 127 402 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc273740g00002 460 Gene3D Transferase(Phosphotransferase) domain 1 204 414 - -
Stsc273740g00002 460 ProSitePatterns Serine/Threonine protein kinases active-site signature. 247 259 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc273740g00002 Stsc-Chr273740 7927 10129 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc273740g00002 10 460 Receptor kinase-like Gene Family AT1G25390 57.701 4.84e-176 506
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK_LRK10L-1 Stsc273740g00002 Pkinase 7.9e-50 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc273740g00002 - - ahf:112712053 764.607