Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc273681g00001 ATGGATTCCGATTATGCATTTCTAGAATCTGTTCAACAATACCTTCTTGGAAATGATTCCAACACCATGGTTGATCTTTTAGACCTTAATACCCTCCAAGAACCCTCTCACAGCCCCTTACCTAACCCTAATAAATTTCATAACAATAATTCAAATGACGACGCAACGGATCATACATTACACGCGCCTCCAACGTGGAAGCGCTATAGAGGCGTGAGGCGGCGGCCGTGGGGGAAGTTTGCGGCCGAGATAAGGGATCCAAAGAAGAACGGAGCTAGGGTTTGGCTCGGAACTTATGAAACCGAAGAAGAAGCTGCTTTGGCATATGATAGAGCTGCTTTCAAATTGCGTGGTCAAAAAGCTAAGCTCAATTTTCCTCATCTTATTGCTGCTTCTGATGATTCGCCAATGATAGAGATCACAACTTGTAAGGAGAATTTCTCAGATTCATCATCATCATCACCACCACTTGCAGGGTCAAAGAGGAAGAGGAACTTAACTCATTTACTTAATCAATTAGCCAAAAATAAGAGCCAATCCAAAGTATAA 549 0.4244 MDSDYAFLESVQQYLLGNDSNTMVDLLDLNTLQEPSHSPLPNPNKFHNNNSNDDATDHTLHAPPTWKRYRGVRRRPWGKFAAEIRDPKKNGARVWLGTYETEEEAALAYDRAAFKLRGQKAKLNFPHLIAASDDSPMIEITTCKENFSDSSSSSPPLAGSKRKRNLTHLLNQLAKNKSQSKV 182
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc273681g00001 182 MobiDBLite consensus disorder prediction 33 64 - -
Stsc273681g00001 182 ProSiteProfiles AP2/ERF domain profile. 68 126 IPR001471 GO:0003700|GO:0006355
Stsc273681g00001 182 PANTHER DNA-BINDING DOMAIN 52 162 IPR044808 GO:0003700|GO:0009873
Stsc273681g00001 182 MobiDBLite consensus disorder prediction 33 58 - -
Stsc273681g00001 182 CDD AP2 67 128 IPR001471 GO:0003700|GO:0006355
Stsc273681g00001 182 Pfam AP2 domain 68 118 IPR001471 GO:0003700|GO:0006355
Stsc273681g00001 182 SMART rav1_2 68 132 IPR001471 GO:0003700|GO:0006355
Stsc273681g00001 182 PRINTS Ethylene responsive element binding protein signature 69 80 IPR001471 GO:0003700|GO:0006355
Stsc273681g00001 182 PRINTS Ethylene responsive element binding protein signature 108 128 IPR001471 GO:0003700|GO:0006355
Stsc273681g00001 182 Gene3D AP2/ERF domain 67 127 IPR036955 GO:0003700|GO:0006355
Stsc273681g00001 182 FunFam Ethylene-responsive transcription factor 2 67 127 - -
Stsc273681g00001 182 SUPERFAMILY DNA-binding domain 68 127 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc273681g00001 Stsc-Chr273681 4560 5108 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc273681g00001 68 137 AP2-EREBP Transcription Factor Family AT2G44840 81.429 6.27e-38 128
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Stsc273681g00001 AP2 6.4e-16 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc273681g00001 K09286 - gmx:548037 189.504