Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc273678g00001 ATGCAGCCCAAGTCTGAAACTGCAAATCGGCTGAGGTCAGATCCACATTCCTTTCAACCTAGCGGTGTTTATTCGGAGCCTTGGTGGCGGGGTGTTGGTTACAGTGCTGTCCCTCAAGCCATGCCTGGTGCAAATGCATCCAATTCCTCCTCTCTTGAATGTCCTAATGGGGGTGATTCAGAATCCAATGAGGAAGGTCAGTCATTATCCAATAGTGGGATGAATGAGGAAGATGATGATGCTGCCAAGGATTCACAAGCTGCTGATCCTAATGAATCAGGAAATTATGGACAAGAAAACCAAGGGATTCAGCATTCTGCACCTTCAGGACGTGAAGAAGGTCTTGCTCAGGCTCCACAGCTTGAACTCGTTGGTCATTCAATTGCATGTGCTACAAATCCTTATCAAGATCCATACTATGGGGGCATGATGGCAGCTTATGGTCCTCAGCAGTTGGGATATGCTCCTTTTATAGGAATGCCCCATGCCAGAATGCCATTGCCTCTTGAGATGGCACAAGAGCCTGTTTATGTGAATGCTAAACAATACCAAGGAATCCTGAGGCGAAGGCAGGCTCGAGCTAAAGCAGAGCTTGAAAAGAAGCTAATAAAATCTAGAAAGCCATATCTTCATGAATCCCGGCATCAGCATGCTATGCGAAGGGCAAGGGGTACCGGAGGGCGTTTTGCAAAGAAAACTGAAGTTGAGGGTTCAAACAAGGGCAAAGAAAAGGATGGTTCAGGTCCAGTCCTATCATCACAGTCAATCAGTTCATCTGGTTCTGAACCTTTGGCTTGCGACTCCAACCAAACTTGGAACTCTCCCAATGTGCAACATGATGCTAGGGGATCGAAAGTGCACGACAAATACGAAAATGGAAGTGGCTCCTACCACAGTCATAATGGTTTGCAATCTTATCATTTGCACTCTGGTGACAGAGTGGAGGAAGGTGACTGTTCCGGTCAGCAACGGGGAAGCATCTCCAACGAGCATGCATCGGCGAGGCGCCTTGCTATTCAGTAG 1023 0.4751 MQPKSETANRLRSDPHSFQPSGVYSEPWWRGVGYSAVPQAMPGANASNSSSLECPNGGDSESNEEGQSLSNSGMNEEDDDAAKDSQAADPNESGNYGQENQGIQHSAPSGREEGLAQAPQLELVGHSIACATNPYQDPYYGGMMAAYGPQQLGYAPFIGMPHARMPLPLEMAQEPVYVNAKQYQGILRRRQARAKAELEKKLIKSRKPYLHESRHQHAMRRARGTGGRFAKKTEVEGSNKGKEKDGSGPVLSSQSISSSGSEPLACDSNQTWNSPNVQHDARGSKVHDKYENGSGSYHSHNGLQSYHLHSGDRVEEGDCSGQQRGSISNEHASARRLAIQ 340
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc273678g00001 340 MobiDBLite consensus disorder prediction 248 280 - -
Stsc273678g00001 340 MobiDBLite consensus disorder prediction 1 20 - -
Stsc273678g00001 340 SMART cbf3 171 232 IPR001289 GO:0003700|GO:0006355
Stsc273678g00001 340 ProSitePatterns NF-YA/HAP2 subunit signature. 177 197 IPR018362 GO:0003677|GO:0016602
Stsc273678g00001 340 ProSiteProfiles NF-YA/HAP2 family profile. 172 232 IPR001289 GO:0003700|GO:0006355
Stsc273678g00001 340 MobiDBLite consensus disorder prediction 1 115 - -
Stsc273678g00001 340 MobiDBLite consensus disorder prediction 205 340 - -
Stsc273678g00001 340 Gene3D - 172 234 - -
Stsc273678g00001 340 Pfam CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B 174 229 IPR001289 GO:0003700|GO:0006355
Stsc273678g00001 340 MobiDBLite consensus disorder prediction 41 75 - -
Stsc273678g00001 340 PRINTS CCAAT-binding transcription factor subunit B signature 206 229 IPR001289 GO:0003700|GO:0006355
Stsc273678g00001 340 PRINTS CCAAT-binding transcription factor subunit B signature 175 197 IPR001289 GO:0003700|GO:0006355
Stsc273678g00001 340 MobiDBLite consensus disorder prediction 227 243 - -
Stsc273678g00001 340 PANTHER TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED 15 288 IPR001289 GO:0003700|GO:0006355
Stsc273678g00001 340 MobiDBLite consensus disorder prediction 207 226 - -
Stsc273678g00001 340 MobiDBLite consensus disorder prediction 88 107 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc273678g00001 Stsc-Chr273678 6899 10853 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc273678g00001 16 274 CCAAT-HAP2 Transcription Factor Family AT5G12840 55.769 8.20e-92 273
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YA Stsc273678g00001 CBFB_NFYA 6.3e-27 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc273678g00001 K08064 - gmx:100808378 524.628